Locus 207

Sequence ID X_DroMel_CAF1
Location 738,377 – 738,488
Length 111
Max. P 0.750145
window316

overview

Window 6

Location 738,377 – 738,488
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.79
Mean single sequence MFE -42.90
Consensus MFE -34.10
Energy contribution -33.38
Covariance contribution -0.72
Combinations/Pair 1.15
Mean z-score -1.68
Structure conservation index 0.79
SVM decision value 0.47
SVM RNA-class probability 0.750145
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 738377 111 + 22224390
------AUCCCGAAACGGGACGAUCUG---CCUCUCGUUGCUUGGGCAAGUGUGGAUGUUUGGUGGACCCAGUGGCAUCCAUCGGGUCCACUUCGCAAUUAUUAGCCGGAGUUCGUUGUU
------....((((((((((.(.....---).)))))))((((.(((.((((....(((..(((((((((.((((...)))).)))))))))..)))..)))).))).)))))))..... ( -43.40)
>DroSec_CAF1 54198 114 + 1
------AUCCGGAAACGGGACGAUCUGCCGCCUCUCGUUGCUUGGGCAAGUGUGGAAGUUUGGUGGACCCAGUGGCAUCCAUCGGGUCCACUUCGCAAUUAUCAGCUGGAGUUCGUUGUU
------..(((....)))(((((.((.((.((.(.(.((((....))))).).))..((..(((((((((.((((...)))).)))))))))..))...........)))).)))))... ( -45.40)
>DroSim_CAF1 23544 114 + 1
------AUCCGGAAACGGGACGAUCUGCCGCCUCUCGUUGCUUGUGCAAGUGUGGAAGUUUGGUGGACCCAGUGGCAUCCAUCGGGUCCACUUCGCAAUUAUCAGCUGGAGUUCGUUGUU
------..(((....)))(((((.((.((.((.(.(.((((....))))).).))..((..(((((((((.((((...)))).)))))))))..))...........)))).)))))... ( -45.60)
>DroEre_CAF1 60733 117 + 1
AUCCCGAUCCCGAGAUGGGACGAUCUG---CCUCUCUUUGCUUGGGCAAAAGUGGAUGCUUGGCGGACCCAGUGGCAUCCAUCGGGUCCUCUUCGCAAUUAUCAGCCAGAGUUCGUUGUU
.((((.(((....)))))))(((((((---((.((.(((((....))))))).)).(((..((.((((((.((((...)))).)))))).))..))).........))))..)))..... ( -40.40)
>DroYak_CAF1 57336 111 + 1
------AUCCCGAGGUGGGACGAUCUG---CCUCUCUUUGCUUGGGCAAAAGUGGAAGCUUGUUGGACCCAGUGGCAUCCAUCGGGUCCGCGUCGCAGUUAUCUGCCAGAGUUCGUUGUU
------.((((((((..(......)..---))))..(((((....))))).).)))(((((((.((((((.((((...)))).))))))))...((((....))))..)))))....... ( -39.70)
>consensus
______AUCCCGAAACGGGACGAUCUG___CCUCUCGUUGCUUGGGCAAGUGUGGAAGUUUGGUGGACCCAGUGGCAUCCAUCGGGUCCACUUCGCAAUUAUCAGCCGGAGUUCGUUGUU
........((......))(((((((((...((...((((((....)))).)).))..((..(((((((((.((((...)))).)))))))))..))..........))))..)))))... (-34.10 = -33.38 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:01 2006