Locus 2068

Sequence ID X_DroMel_CAF1
Location 5,668,192 – 5,668,297
Length 105
Max. P 0.833694
window3361

overview

Window 1

Location 5,668,192 – 5,668,297
Length 105
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -29.97
Consensus MFE -28.53
Energy contribution -28.87
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.99
Structure conservation index 0.95
SVM decision value 0.72
SVM RNA-class probability 0.833694
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5668192 105 - 22224390
CAUACAUUUCCAUGGCAAUCGAGCUUAACCAGCAUUUCCCACUUAAGCCUUCAGGUUCGGUGAAAAUUUUCGGGUUGGCAGCUGGCUGUCGACUCUUUUGCCUUC
.............(((((..(((((.....)))......((((..((((....)))).)))).......))((((((((((....))))))))))..)))))... ( -30.10)
>DroSec_CAF1 7265 105 - 1
CAUACAUUUCCAUGGCAAUCGAGUUUAAACAGAAUUUCCCACUUAAGCCUUCAGGUUCGGUGAAAAUUUUCGGGUUGGCAGCUGGCUGUCGACUCUUUUGCCUUC
.............(((((............(((((((..((((..((((....)))).)))).))))))).((((((((((....))))))))))..)))))... ( -29.60)
>DroSim_CAF1 8068 105 - 1
CAUACAUUUCCAUGGCAAUCGAGUUUAAGCAGAAUUUCCCACUUAAGCCUUCAGGUUCGGUGAAAAUUUUCGGGUUGGCAGCUGGCUGUCGACUCUUUUGCCUUC
.............(((((..........(.(((((((..((((..((((....)))).)))).))))))))((((((((((....))))))))))..)))))... ( -30.20)
>consensus
CAUACAUUUCCAUGGCAAUCGAGUUUAAACAGAAUUUCCCACUUAAGCCUUCAGGUUCGGUGAAAAUUUUCGGGUUGGCAGCUGGCUGUCGACUCUUUUGCCUUC
.............(((((............(((((((..((((..((((....)))).)))).))))))).((((((((((....))))))))))..)))))... (-28.53 = -28.87 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:26 2006