Locus 2056

Sequence ID X_DroMel_CAF1
Location 5,648,037 – 5,648,152
Length 115
Max. P 0.939157
window3343

overview

Window 3

Location 5,648,037 – 5,648,152
Length 115
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 87.80
Mean single sequence MFE -30.68
Consensus MFE -23.06
Energy contribution -24.68
Covariance contribution 1.62
Combinations/Pair 1.06
Mean z-score -2.38
Structure conservation index 0.75
SVM decision value 1.28
SVM RNA-class probability 0.939157
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5648037 115 + 22224390
CGCUCACAACUUUCAAGUGUUUAAUUGCAGUUUGCGAGUGCUAAAUACUUGAUUUAUUUUUUCUGCGUAUAUAUGUAUAUAUGUACAUGCAGCCGAUCUGCAGCUACUUGGGGCU-
.((((.(((...(((((((((((.((((.....))))....)))))))))))............((((((((((....)))))))).(((((.....)))))))...))))))).- ( -33.80)
>DroSec_CAF1 37416 115 + 1
CGCUCACAACUUUCAAGUGUUUAAUUGCAGUUUGCGAGCGCUAACUACUUGAUUUAUUUUUUCUGCGUAUAUAUGUAUAUAUGUGCAUGCAGCCGAUCUGCAGCUACUUGGGGCU-
.((((.(((...(((((((((...((((.....)))).....))).))))))............((((((((((....)))))))).(((((.....)))))))...))))))).- ( -30.40)
>DroSim_CAF1 36518 115 + 1
CGCUCACAACUUUCAAGUGUUUAAUUGCAGUUUGCGAGUGCUAAAUACUUGAUUUAUUUUUUCUGCGUAUAUAUGUAUAUAUGCGCAUGCAGCCGAUCUGCAGCUACUUGGGGCU-
.((((.(((...(((((((((((.((((.....))))....)))))))))))...........((((((((((....))))))))))(((((.....))))).....))))))).- ( -36.60)
>DroEre_CAF1 37433 97 + 1
----CACAACUUUCAAGUGCUUAAUUGCAGCCUGCGAGUGCUAAAUACUUGAUUUAUUUUUUCUGCGCAUGU----ACAU----------GGCCGAUCUGCAGCUACUUGGGGCU-
----......(..((((((((.....((((....((((((.....))))))..........((.((.(((..----..))----------))).)).))))))).)))))..)..- ( -21.50)
>DroYak_CAF1 37506 110 + 1
CGCUCACAACUUUCAAGUGUUUAAUUGCAGUUUGCAAGUGCUAAAUACUUGAUUUAUUUUUUCUGCGUAUAUAUGCACAUC------UGCAGCCGAUCUGCAGCUACUUGGGGCUA
.((((.(((...(((((((((((.((((.....))))....)))))))))))...........(((((....)))))...(------(((((.....))))))....))))))).. ( -31.10)
>consensus
CGCUCACAACUUUCAAGUGUUUAAUUGCAGUUUGCGAGUGCUAAAUACUUGAUUUAUUUUUUCUGCGUAUAUAUGUAUAUAUG__CAUGCAGCCGAUCUGCAGCUACUUGGGGCU_
.((((.(((...(((((((((((.((((.....))))....)))))))))))..........(((((.((...(((((........)))))....)).)))))....))))))).. (-23.06 = -24.68 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:10 2006