Locus 2045

Sequence ID X_DroMel_CAF1
Location 5,613,165 – 5,613,275
Length 110
Max. P 0.785443
window3330

overview

Window 0

Location 5,613,165 – 5,613,275
Length 110
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 97.64
Mean single sequence MFE -24.98
Consensus MFE -22.22
Energy contribution -22.46
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.47
Structure conservation index 0.89
SVM decision value 0.57
SVM RNA-class probability 0.785443
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5613165 110 - 22224390
UUGCAAACCAAACAAGCGUGUACUAUUUUAACCUUUAGAGUUUAGCAAUCAACUGGCAAUGGACAUUACCAUUUGUUGGUAGCAACUAGCGGCUUAAUAGACGCCAUAAA
...............(.((((.(((((....((.....((((..((.((((((....(((((......))))).)))))).))))))...))...))))))))))..... ( -21.30)
>DroSec_CAF1 3089 110 - 1
UUGCAAACCAAACAAGCGUGUACUAUUUUAACCUUUAGAGUUGAGCAAUCAACUGGCAAUGGUCAUUACCAUUUGUUGGUAGCAACUAGCGGCUUAAUAGACGCCAUAAA
...............(.((((.(((((...........((((((....))))))(((..((((..((((((.....))))))..))))...))).))))))))))..... ( -26.70)
>DroSim_CAF1 3017 110 - 1
UUGCAAACCAAACAAGCGUGUACUAUUUUAACCUUUAGAGUUGAGCAAUCAACUGGCAAUGGUCAUUACCAUUUGUUGGUAGCAACUAGCGGCUUAAUAGACGCCAUAAA
...............(.((((.(((((...........((((((....))))))(((..((((..((((((.....))))))..))))...))).))))))))))..... ( -26.70)
>DroEre_CAF1 3014 110 - 1
UUGCAAACCAAACAAGUGUGUACUAUUUUAACCUUUAGAGUUGAGCAAUCAACUGGCAAUGGAUAUUACCAUUUGUUGGUAGCAACUAGCGGCUUAAUAGAUGCCAUAAA
((((..(((((.((((((.(((.(((((...((.....((((((....))))))))....))))).)))))))))))))).)))).....(((.........)))..... ( -29.80)
>DroYak_CAF1 2967 110 - 1
UUGCAAACCAAACAAGCGUGUACUAUUUUAACCUUUAGAGUUUAGCAAUCAACUGGCAAUGGACAUUACCAUUUGUUGGUAGCAACUAGCGGCUUAAUAGAUGCCAUAAA
((((..............(((...((((((.....))))))...)))....((..(((((((......))).))))..)).)))).....(((.........)))..... ( -20.40)
>consensus
UUGCAAACCAAACAAGCGUGUACUAUUUUAACCUUUAGAGUUGAGCAAUCAACUGGCAAUGGACAUUACCAUUUGUUGGUAGCAACUAGCGGCUUAAUAGACGCCAUAAA
((((..(((((.(((((.....(((..........)))((((((....)))))).)).((((......)))))))))))).)))).....(((.........)))..... (-22.22 = -22.46 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:58 2006