| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,589,337 – 5,589,442 |
| Length | 105 |
| Max. P | 0.653105 |
| Location | 5,589,337 – 5,589,442 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.20 |
| Mean single sequence MFE | -20.47 |
| Consensus MFE | -11.31 |
| Energy contribution | -12.64 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.653105 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5589337 105 + 22224390 CAGAGUUAUGCACAAAUGUAUAAUAAUUUGAGUUUCGAGCCAAACAAUUUGGUGGUACGCUUUUUGAAAAAAAAAAA----AAAAACUCUGCAAAAAGUGUGAGCUCAA----------- ....((((((((....))))))))...((((((((...(((((.....)))))...((((((((((...........----..........))))))))))))))))))----------- ( -24.40) >DroSec_CAF1 17451 103 + 1 CAGAGUUAUGCACAAAUGUAUAAUAAUUUGAGUUUCAAGCCAAACAAUUUGGUCGUACGCUUUUUGAAAAAAAAAAA----AAAAAA--CGUAAAAAUUAGCAGCUAAA----------- ((((((((((((....))))))))..))))((((.(..(((((.....)))))..((((.(((((............----))))).--)))).......).))))...----------- ( -15.10) >DroEre_CAF1 18097 120 + 1 CAGAGUGAUGCUUAAAUGUAUAAUAGGCGGAGUUUCAAGCCAAACAAUUUGGUAGUACGCUAUUUGAAAAGCAACCAAGCCCAAAACAAAACAAAAAGUAGAAGCAAAAUGCUUUCGGCA .......((((......))))....((..(..(((((((((((.....)))))((....))..))))))..)..))..(((.........((.....)).(((((.....))))).))). ( -21.90) >consensus CAGAGUUAUGCACAAAUGUAUAAUAAUUUGAGUUUCAAGCCAAACAAUUUGGUAGUACGCUUUUUGAAAAAAAAAAA____AAAAAC__AGCAAAAAGUAGAAGCUAAA___________ ....(((((((......))))))).......(((((..(((((.....))))).....((((((((.........................)))))))).)))))............... (-11.31 = -12.64 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:38 2006