Locus 203

Sequence ID X_DroMel_CAF1
Location 722,123 – 722,218
Length 95
Max. P 0.554427
window311

overview

Window 1

Location 722,123 – 722,218
Length 95
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 85.80
Mean single sequence MFE -18.73
Consensus MFE -14.75
Energy contribution -15.08
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.79
SVM decision value 0.04
SVM RNA-class probability 0.554427
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 722123 95 - 22224390
----CCUCUCUCCUUCCGGCUUUUGGCUUCAAUUCGUUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAACACU
----.............(((..(((....)))...((((((((.((((((((.....))))))..))))))))))....)))................. ( -18.30)
>DroSec_CAF1 38201 95 - 1
----CCUCUCUCCUUCCGGCUUUUGGCUUCAAUUCGUUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAACACU
----.............(((..(((....)))...((((((((.((((((((.....))))))..))))))))))....)))................. ( -18.30)
>DroEre_CAF1 43337 99 - 1
GCUGCCCCUCGCCCACCAGCUUUUGGCUUCAAUUCGUUGUGAUUGCUUUGUACCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAACACU
((((............))))...((((...(((..((((((((.((((((((.....))))))..))))))))))))).))))................ ( -19.00)
>DroWil_CAF1 51995 94 - 1
----ACUCCAUUCGCCUGGCUUUUGCCUUCAAUUCGUUGUGAUUGCCUUGUAUCGAUUACAAAAUGCAUUACAACAU-UGCCACAUGAUAAAUAACAUA
----....(((..((..(((....)))........((((((((.((.(((((.....)))))...))))))))))..-.))...)))............ ( -18.60)
>DroYak_CAF1 39493 95 - 1
----CCUCUCUUCAUCCGGCGCUGGGCUUCAAUUCGUUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAACACU
----.......((((..(((((...))........((((((((.((((((((.....))))))..))))))))))....)))..))))........... ( -20.60)
>DroMoj_CAF1 75601 81 - 1
-----------------GGGGCUGGGCUUCAAUUCGUUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAU-UGCCACAUGAUAAAUAACAUC
-----------------(((((...))))).....((((((((.((((((((.....))))))..))))))))))..-..................... ( -17.60)
>consensus
____CCUCUCUCCUUCCGGCUUUUGGCUUCAAUUCGUUGUGAUUGCUUUGUAUCGAUUACAAAAUGCAUUACAACAUUUGCCACAUGAUAAAUAACACU
........................(((........((((((((.((((((((.....))))))..))))))))))....)))................. (-14.75 = -15.08 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:54 2006