| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,519,448 – 5,519,556 |
| Length | 108 |
| Max. P | 0.913565 |
| Location | 5,519,448 – 5,519,556 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.74 |
| Mean single sequence MFE | -33.28 |
| Consensus MFE | -28.86 |
| Energy contribution | -28.12 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913565 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5519448 108 - 22224390 ACCUCGUACCCCUGGCUGCACAUCAUCGCCUCCGUGAUGGCCUGGGCUUCCAGUGUCAUUAACCCGAUCAUCUAUGCGGCCAGCAAUCGCAACUACAGGUAAGUUU------------GC ((((.(((....((((((((.((.((((......(((((((((((....)))).)))))))...)))).))...))))))))((....))...)))))))......------------.. ( -34.30) >DroVir_CAF1 13309 108 - 1 ACCAACUAUCCCUGGCUGCACAUCAUCGCCUCGGUGAUGGCCUGGGCCUCCAGUGUCAUCAAUCCGAUUAUCUAUGCGGCCAGCAAUCGCAACUACAGGUGUGACC------------CU ...........(((((((((..........(((((((((((((((....)))).)))))))..)))).......)))))))))...(((((.(....).)))))..------------.. ( -37.43) >DroGri_CAF1 21614 108 - 1 ACCUCCUAUCCCUGGCUGCACAUCAUUGCCUCGGUGAUGGCCUGGGCCUCUAGCGUCAUCAAUCCGAUUAUCUAUGCGGCAAGCAAUCGCAACUACAGGUGCGAUU------------AA ..............((((((((....))..(((((((((((((((....)))).)))))))..)))).......))))))....(((((((.(....).)))))))------------.. ( -33.10) >DroWil_CAF1 9850 120 - 1 ACCUCAUAUCCCUGGCUGCACAUCAUUGCCUCGGUAAUGGCUUGGGCCUCCAGUGUCAUUAAUCCGAUUAUCUAUGCAGCCAGCAAUCGCAAUUAUAGGUAAUAAUAAAUAAUGAAUGAA ((((.(((....((((((((((....))..(((((((((((((((....)))).)))))))..)))).......))))))))((....))...))))))).................... ( -32.00) >DroMoj_CAF1 12426 108 - 1 ACCUCAUAUCCUUGGCUGCACAUCAUUGCCUCUGUAAUGGCCUGGGCCUCCAGCGUCAUCAAUCCGAUUAUCUAUGCGGCCAGCAAUCGUAACUACAGGUAAGACU------------CA ((((.......(((((((((....(((((....)))))(((((((....)))).))).................))))))))).....((....))))))......------------.. ( -25.90) >DroAna_CAF1 8599 107 - 1 ACAUCGUAUCCCUGGCUGCACAUCAUCGCCUCGGUGAUGGCCUGGGCCUCCAGUGUCAUCAAUCCGAUCAUCUAUGCGGCCAGUAACAGGAAUUACAGGUAUGUUC------------U- ....((((((.(((((((((..........(((((((((((((((....)))).)))))))..)))).......))))))))).....(......).))))))...------------.- ( -36.93) >consensus ACCUCAUAUCCCUGGCUGCACAUCAUCGCCUCGGUGAUGGCCUGGGCCUCCAGUGUCAUCAAUCCGAUUAUCUAUGCGGCCAGCAAUCGCAACUACAGGUAAGAUU____________AA ...........(((((((((.((.((((......(((((((((((....)))).)))))))...)))).))...)))))))))..................................... (-28.86 = -28.12 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:08 2006