Locus 1980

Sequence ID X_DroMel_CAF1
Location 5,424,989 – 5,425,081
Length 92
Max. P 0.921705
window3225

overview

Window 5

Location 5,424,989 – 5,425,081
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 76.97
Mean single sequence MFE -32.32
Consensus MFE -17.22
Energy contribution -17.50
Covariance contribution 0.28
Combinations/Pair 1.29
Mean z-score -2.20
Structure conservation index 0.53
SVM decision value 1.14
SVM RNA-class probability 0.921705
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5424989 92 + 22224390
CCUCUCUCGUUCCCACCCCAGCAAAGGUGGUCUCAGAAGAGGAAGCCAUUAUAAAAUUCCCUUCGCGCGAGGGGUUGGGAAUGAUGCAAA---GC
......(((((((((((((.((.....((....))((((.((((............))))))))..))..)))).)))))))))......---.. ( -31.50)
>DroSec_CAF1 32727 91 + 1
CCUCUCUCGUUCCCACCCCUGCAAAGGUGGUCUCAGAAGAGGAAGCCAUUAUAAAUUUCCCUUCGU-CGAGGGGUUGGGAAUGAUGCGUG---GC
((.(.(((((((((((((((((.(((((((((((....)))...))))...........)))).))-..))))).))))))))).).).)---). ( -32.90)
>DroSim_CAF1 31577 91 + 1
CCUCUCUCGUUCCCACCCCUGCAAAGGUGGUCUCAGAAGAGGAAGCCAUUAUAAAUUUCCCUUCGU-CGAGGGGUUGGGAAUGAUGCGAG---GC
((((.(((((((((((((((((.(((((((((((....)))...))))...........)))).))-..))))).))))))))).).)))---). ( -37.10)
>DroEre_CAF1 41147 91 + 1
CCUCUCUCGCUCCAACCCCUGCAAAGGUGGUCUCAGAUGAGGAAGCCAUUAUAAAAUUUCCUACGU-CGAGGGGUUGAGAAAGAUGCGAA---GC
.((.(((((((((.((((((....))).)))....((((((((((...........)))))).)))-)..)))).))))).)).......---.. ( -27.60)
>DroYak_CAF1 33543 81 + 1
CCUCUCUCGUUCCCACCCCUACAUAGGUGGCCUCAGCAGAGGAAGCCAUUAUACAUUUUCCUUCGU-CGAGGGGUUGGGAAA-------------
.........(((((((((((.....(((..((((....))))..))).............(.....-.)))))).)))))).------------- ( -28.00)
>DroAna_CAF1 51761 86 + 1
UGGCUCUC--------UCCCUCGGAGGUGGACUCUGAAGAGGAAGCCAUUAUAAAUUUCCCAUCUG-CGGCCCGCGUGGGGUGCUUCGAGGGGGC
(((((..(--------((..((((((.....)))))).)))..))))).........((((.((.(-((.(((....))).)))...)).)))). ( -36.80)
>consensus
CCUCUCUCGUUCCCACCCCUGCAAAGGUGGUCUCAGAAGAGGAAGCCAUUAUAAAUUUCCCUUCGU_CGAGGGGUUGGGAAUGAUGCGAG___GC
....((((.................(((..((((....))))..)))...........((((((....))))))..))))............... (-17.22 = -17.50 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:25 2006