| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,386,934 – 5,387,028 |
| Length | 94 |
| Max. P | 0.958276 |
| Location | 5,386,934 – 5,387,028 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.78 |
| Mean single sequence MFE | -32.27 |
| Consensus MFE | -18.12 |
| Energy contribution | -17.90 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.49 |
| SVM RNA-class probability | 0.958276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5386934 94 + 22224390 ACUCACCCCGGAAAUGUUGG----------UCCUCUCCCAAGGGAAUCCGG-----GCAUUC-------GCCAGAAACUUCGGACUAACCACAAUGGCACAUUGUUGCCAUUGACU ...............(((((----------(((..(((....))).....(-----((....-------))).........))))))))..((((((((......))))))))... ( -30.90) >DroSec_CAF1 68107 92 + 1 ACCCACCCCGGAAAUGUUGG----------UCCUC--CCAAGGGAAUCCGC-----GCAUUC-------GCCAGGAACUUCGGACUAACCACAAUGGCACAUUGUUGCCAUUGACU ..((.....))....(((((----------(((((--(....))).(((((-----(....)-------))..))).....))))))))..((((((((......))))))))... ( -31.40) >DroYak_CAF1 61139 113 + 1 -CACCCCCCGGAAAUGUUGGCCCAACGCGUUCCUC--CCAAGGGAUUCUGUAUUCCGGAUUCCAAAAGGGAAAGGACCUUCGGACUAACCACAAUGGCACAUUGUUGCCAUUGACU -......(((((...((((...))))..((((.((--((...(((.((((.....)))).)))....))))..)))).)))))........((((((((......))))))))... ( -34.50) >consensus ACACACCCCGGAAAUGUUGG__________UCCUC__CCAAGGGAAUCCGC_____GCAUUC_______GCCAGGAACUUCGGACUAACCACAAUGGCACAUUGUUGCCAUUGACU ........((((..(.((((.................)))).)...))))...............................((.....)).((((((((......))))))))... (-18.12 = -17.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:09 2006