Locus 1962

Sequence ID X_DroMel_CAF1
Location 5,379,499 – 5,379,611
Length 112
Max. P 0.878538
window3190

overview

Window 0

Location 5,379,499 – 5,379,611
Length 112
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 91.59
Mean single sequence MFE -28.03
Consensus MFE -26.39
Energy contribution -26.39
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 0.94
SVM decision value 0.90
SVM RNA-class probability 0.878538
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5379499 112 - 22224390
AUCUGCUACAGCAGCCCUGAUUAUUCGAUUAUAUAUCAUUGUUUGGUGGAUGUUUUGCGUUCGCAUCAAUUGAUUAAAAAAUUGCGAUUAGGGCUUUCGCAGUGACAAAUCG--
..((((......((((((((((...(((((....(((((((....(((((((.....)))))))..))).)))).....))))).))))))))))...))))..........-- ( -31.10)
>DroSec_CAF1 60851 105 - 1
AUCUGCU-------CCCUGAUUAUUCGAUUAUAUAUCAUUGUUUGGUGGAUGUUUUGCGUUCGCAUCAAUUGAUUAA--AAUUGCGAUUAGGGCUUUCGCAGUGCCUAAUCGAU
..((((.-------((((((((...(((((.((.(((((((....(((((((.....)))))))..))).)))))).--))))).)))))))).....))))............ ( -26.50)
>DroSim_CAF1 47811 105 - 1
AUCUGCU-------CCCUGAUUAUUCGAUUAUAUAUCAUUGUUUGGUGGAUGUUUAGCGUUCGCAUCAAUUGAUUAA--AAUUGCGAUUAGGGCUUUCGCAGUGCCUAAUCGAU
..((((.-------((((((((...(((((.((.(((((((....(((((((.....)))))))..))).)))))).--))))).)))))))).....))))............ ( -26.50)
>consensus
AUCUGCU_______CCCUGAUUAUUCGAUUAUAUAUCAUUGUUUGGUGGAUGUUUUGCGUUCGCAUCAAUUGAUUAA__AAUUGCGAUUAGGGCUUUCGCAGUGCCUAAUCGAU
..((((........((((((((...(((((....(((((((....(((((((.....)))))))..))).)))).....))))).)))))))).....))))............ (-26.39 = -26.39 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:54 2006