Locus 1940

Sequence ID X_DroMel_CAF1
Location 5,313,532 – 5,313,645
Length 113
Max. P 0.734968
window3150

overview

Window 0

Location 5,313,532 – 5,313,645
Length 113
Sequences 4
Columns 114
Reading direction forward
Mean pairwise identity 90.76
Mean single sequence MFE -32.90
Consensus MFE -29.65
Energy contribution -29.65
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.90
SVM decision value 0.43
SVM RNA-class probability 0.734968
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5313532 113 + 22224390
AAGCGGGCGACGCGAGUGUUCGACUGUGAAAUACGCUUUGGAAAAUGCCGGCGUUUUCAUUUCGGUCAGCCCAAUGGAAAUGAGAUUCGCCCACGGAUAAAACAAAAAAAAAA-
...(((((.((....))))))).(((((......((.((....)).)).((((.(((((((((.((.......)).)))))))))..))))))))).................- ( -32.20)
>DroSec_CAF1 50067 106 + 1
AAGCGGGCGACGCGAGUGUUCGACUGUGAAAUACGCUUUGGAAAAUGCCGGCGUUUUCAUUUCGGGAG-GCCAAUGGAAAUGAGUUUCGCCCACGGACAAAA------AAAAA-
..(.((((.((....))..((((..((((((.(((((..((......))))))))))))).))))(((-((..((....))..))))))))).)........------.....- ( -31.20)
>DroSim_CAF1 41568 106 + 1
AAGCGGGCGACGCGAGUGUUCGACUGUGAAAUACGCUUUGGAAAAUGCCGGCGUUUUCAUUUCGGGCG-GCCAAUGGAAAUGAGUUUCGCCCACGGACAAAA------AAAAA-
..(.((((((.(((..(((((((..((((((.(((((..((......))))))))))))).)))))))-..).((....))..)).)))))).)........------.....- ( -33.70)
>DroEre_CAF1 52970 105 + 1
AAGCGGGCGACGCGAGUGUUCGACUGUGAAAUACGCUUUGGAAAAUGCCGGCGUUUUCAUUUCGGUGG-GCCAAUGGAAAUGAGAUUCGCCCUCGGACA--A------AAGAGC
..(((.....)))...(((((((..(((((..(((((..((......)))))))(((((((((.((..-....)).))))))))))))))..)))))))--.------...... ( -34.50)
>consensus
AAGCGGGCGACGCGAGUGUUCGACUGUGAAAUACGCUUUGGAAAAUGCCGGCGUUUUCAUUUCGGGCG_GCCAAUGGAAAUGAGAUUCGCCCACGGACAAAA______AAAAA_
..(.((((((..(..((.(((((..((((((.(((((..((......))))))))))))).))((.....))...))).))..)..)))))).).................... (-29.65 = -29.65 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:19 2006