| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,282,600 – 5,282,690 |
| Length | 90 |
| Max. P | 0.523120 |
| Location | 5,282,600 – 5,282,690 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 73.89 |
| Mean single sequence MFE | -34.87 |
| Consensus MFE | -22.11 |
| Energy contribution | -21.57 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523120 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5282600 90 + 22224390 --------------------------UUUGGCCAGUCCGCAUUACGAAAUCGCUGAGGUGGAAAUGCUCCAGUU-UUGGGUAAUUCAUUUGGUCACACCAGGUGGCCACACGGCCAA --------------------------.((((((..(((((.(((((....)).))).)))))..(((.((....-..))))).......(((((((.....)))))))...)))))) ( -31.30) >DroSec_CAF1 19512 104 + 1 AGCUGUGGCGCAAG------------UUUGGCCAGUUCGCAUUACGGAAUCGCCGAGGCGGAACUGCUCCAGUU-UUGGGUAAUUCAUUUGGUCACACCAGGUGGUCACAAUGCCAA .((((((((.((((------------.((((.((((((((....(((.....)))..)).))))))..)))).)-))).......(((((((.....)))))))))))))..))... ( -34.70) >DroEre_CAF1 19273 114 + 1 AACUGUGGCGCAG-UUUCCCCAUCGAUUUCGCCAGUCCGCAUUACGAAGGCACCGAGGCGGAACUGCUCCAGUUUUUGGGCAAUUCAUUUGGUCACACCAGGUGGGCAC--UGCCAC (((((.((.((((-((((.((.(((.....(((..((........)).)))..))))).)))))))))))))))....((((.(((((((((.....)))))))))...--)))).. ( -38.60) >consensus A_CUGUGGCGCA______________UUUGGCCAGUCCGCAUUACGAAAUCGCCGAGGCGGAACUGCUCCAGUU_UUGGGUAAUUCAUUUGGUCACACCAGGUGGCCACA_UGCCAA ............................((((...(((((....((.......))..)))))..(((.((((...)))))))..((((((((.....)))))))).......)))). (-22.11 = -21.57 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:38 2006