Locus 1902

Sequence ID X_DroMel_CAF1
Location 5,278,229 – 5,278,349
Length 120
Max. P 0.965643
window3094

overview

Window 4

Location 5,278,229 – 5,278,349
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.86
Mean single sequence MFE -36.78
Consensus MFE -20.62
Energy contribution -20.70
Covariance contribution 0.08
Combinations/Pair 1.20
Mean z-score -2.53
Structure conservation index 0.56
SVM decision value 1.58
SVM RNA-class probability 0.965643
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5278229 120 + 22224390
ACGCAGAAUGUUGACUGCAUUCUCUCCUUCAAGUGGGUACAGUUUGUGGUCGCAACUGUUCUCAGCUGCGGAGGGGAAAGCCUGACAAUCAGAGAUCCAGCAUUCUUGUAAUUAAAUGUA
..(((((((((((...((.((.((((((((.((((((.((((((.((....)))))))).)))).))..))))))))))))(((.....))).....)))))))).)))........... ( -38.30)
>DroSec_CAF1 15291 107 + 1
ACGCAG------GACUGCAUUUUCUCCUUCAAGUGGGUACAGUUUGUGGCCGCAACUGUUCUCAGCUGCGGAGGGGAAAUCCUGACUAUCACAUACCCAGCAUUUUUGUAAAC-------
..((((------((.(((..((((((((((.((((((.((((((.((....)))))))).)))).))..))))))))))...((.....))........))).))))))....------- ( -33.20)
>DroSim_CAF1 9945 107 + 1
ACACAG------GACUGCAUUUUCUCCUUCAAGUGGGUACAGUUUGUGGCCGCAACUGUUCUCAGCUGCGAAGGGGAAAUCCUGACUAUCAGAUACCCAGCAUUCUUGUAAAC-------
..((((------((.(((..((((((((((.((((((.((((((.((....)))))))).)))).))..))))))))))..(((.....))).......))).))))))....------- ( -39.50)
>DroEre_CAF1 14880 113 + 1
ACGAAGGAUGUUGGCUGAAUUUUCUCCUUCAAGUGGGUACAUUUUGUGGCUGCAAGUGUUCUCAGCAACGGAGGGGAAAUCCUGACUAUCACAUACCCAGCAUUCUGUAAAAA-------
....((((((((((......(((((((((((((((....))))).((.((((..((....)))))).))))))))))))...((.....)).....)))))))))).......------- ( -32.40)
>DroYak_CAF1 10871 112 + 1
-CGAAGGAUGCGGACUGGAUGUUCUCCUUCAAGUGGGCACACUUUGUGGCUGAAACUGUUCUCAGCAAUGGAGGGGAAGUUCCAACUAUCCGAUAUCCAGAAUUCUGUUAAAA-------
-....(((((((((.((((..((((((((((((((....)))).....(((((........)))))..))))))))))..))))....)))).)))))...............------- ( -40.50)
>consensus
ACGCAG_AUG__GACUGCAUUUUCUCCUUCAAGUGGGUACAGUUUGUGGCCGCAACUGUUCUCAGCUGCGGAGGGGAAAUCCUGACUAUCAGAUACCCAGCAUUCUUGUAAAA_______
....................((((((((((..((((.(((.....))).))))..(((....)))....))))))))))......................................... (-20.62 = -20.70 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:28 2006