Locus 189

Sequence ID X_DroMel_CAF1
Location 653,282 – 653,399
Length 117
Max. P 0.627635
window297

overview

Window 7

Location 653,282 – 653,399
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.52
Mean single sequence MFE -41.00
Consensus MFE -29.31
Energy contribution -30.68
Covariance contribution 1.37
Combinations/Pair 1.10
Mean z-score -1.60
Structure conservation index 0.71
SVM decision value 0.19
SVM RNA-class probability 0.627635
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 653282 117 - 22224390
AUGAGCAGCCGAGUUGUUCUUGAUGUUCGUGUCACGAAU-GAGCAAGAUAGGCACGAAAGUCCCUUG--UUACAUGGGUGGAUGCCGAAAUUAAGAGGCACGCGGGCAUCACUAUGAAAG
..(((((((...))))))).(((((((((((((((..((-(((((((...((.((....))))))))--)).)))..)))).((((..........)))))))))))))))......... ( -42.30)
>DroSim_CAF1 17644 119 - 1
AUGAGCAGCCUAGUUGUUCUUGAUGUUCGUGUCACGAAU-UAGCACGAUAGGCACGAAAGUCCCUUGUAUUACAUGGGUGGGUGCCGAAAUUCAGAGGCACGCGGGCAUCACUAUGGAAG
..(((((((...))))))).((((((((((.((((..((-(((.(((..(((.((....)).)))))).))).))..))))(((((..........)))))))))))))))......... ( -37.70)
>DroEre_CAF1 11174 119 - 1
AUGAGCAACCGCGUUGAUCUAG-UGUUCGUGCCACGACUUGAGCACGAUAGGCCCGAAAGUCCCUUGUAUUACAUGGGUGCGUGCCGAAAAUGAGCGGCACGCGGGCAUCUCCAUUGAAG
..((.((((...)))).))(((-((.((((((((.....)).))))))...((((......(((.((.....)).))).((((((((........)))))))))))).....)))))... ( -43.10)
>DroYak_CAF1 11510 119 - 1
AUGAGCGACCACGUUGUUCUUG-UGUGCGUGUCACGAUUUUAUCACGAUAGGCACGAAAGUCCCUUGCAUUACAUGGGCGCGUGCCGAAAUGGAGAGGCACGCGGGCAUCUCUGUCGAAG
..(((((((...))))))).((-(.((((((((..(((...)))......((((((...((((..((.....)).)))).))))))..........)))))))).)))............ ( -40.90)
>consensus
AUGAGCAACCGAGUUGUUCUUG_UGUUCGUGUCACGAAU_GAGCACGAUAGGCACGAAAGUCCCUUGUAUUACAUGGGUGCGUGCCGAAAUUGAGAGGCACGCGGGCAUCACUAUGGAAG
..(((((((...)))))))..((((((((((((.................)))))......(((.((.....)).))).(((((((..........)))))))))))))).......... (-29.31 = -30.68 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:33 2006