Locus 188

Sequence ID X_DroMel_CAF1
Location 652,693 – 652,813
Length 120
Max. P 0.754250
window295 window296

overview

Window 5

Location 652,693 – 652,813
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 91.11
Mean single sequence MFE -46.70
Consensus MFE -38.20
Energy contribution -39.53
Covariance contribution 1.34
Combinations/Pair 1.06
Mean z-score -1.93
Structure conservation index 0.82
SVM decision value -0.04
SVM RNA-class probability 0.514864
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 652693 120 + 22224390
CUUCAAGGUACGCACCAAUGCAGCCGGAGUUCUGCUGCAGGUCAAGCAGCGUGAGGACUUCAGUGCCCACUUUCCUCUGCUAUGGCGUUCGCUCCUGGACGCUCUGGUGCGCUCUAAUGU
......((..(((((((..((((..((((....(((((.......)))))(((.((((....)).))))).)))).))))...((((((((....)))))))).)))))))..))..... ( -44.80)
>DroEre_CAF1 10581 120 + 1
UUUCAAAGUGCGCACCAAUGCAGCCGGAGUUCUGCUACAGGUAGAGCAGCGUCAAGACUUCAGCGCCCACUUUCCGCUGGUAUGGCGUUCCCUCCUGGACGCUCUGGUGCGCUCUAAUGC
......((.((((((((..((..((((.(((((((.....)))))))(((((((.....((((((.........))))))..))))))).....))))..))..)))))))).))..... ( -49.40)
>DroYak_CAF1 10931 120 + 1
CUUCAAAGUGCGCACCAAUGCAGCCGGAGUUCUGCUGCAGGUCGAGCAGCGUCAGGACUUCAGCACCCACUUUCCGCAGGUAUGGCGUUCCCUCCUGGACGCUCUGGUGCGCUCCAAUGC
.......(.((((((((..((.((.(((((((((((((.......)))))...)))))))).))............((((...((.....)).))))...))..)))))))).)...... ( -45.90)
>consensus
CUUCAAAGUGCGCACCAAUGCAGCCGGAGUUCUGCUGCAGGUCGAGCAGCGUCAGGACUUCAGCGCCCACUUUCCGCUGGUAUGGCGUUCCCUCCUGGACGCUCUGGUGCGCUCUAAUGC
......((.((((((((..((.((((((((((((((((.......)))))...))))))))...(((...........)))..)))((((......))))))..)))))))).))..... (-38.20 = -39.53 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 6

Location 652,693 – 652,813
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.11
Mean single sequence MFE -48.40
Consensus MFE -42.81
Energy contribution -41.93
Covariance contribution -0.88
Combinations/Pair 1.14
Mean z-score -1.99
Structure conservation index 0.88
SVM decision value 0.48
SVM RNA-class probability 0.754250
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 652693 120 - 22224390
ACAUUAGAGCGCACCAGAGCGUCCAGGAGCGAACGCCAUAGCAGAGGAAAGUGGGCACUGAAGUCCUCACGCUGCUUGACCUGCAGCAGAACUCCGGCUGCAUUGGUGCGUACCUUGAAG
........(((((((((((.(((.((.((((...((....)).(((((.(((....)))....))))).)))).)).)))))(((((.(.....).))))).)))))))))......... ( -47.30)
>DroEre_CAF1 10581 120 - 1
GCAUUAGAGCGCACCAGAGCGUCCAGGAGGGAACGCCAUACCAGCGGAAAGUGGGCGCUGAAGUCUUGACGCUGCUCUACCUGUAGCAGAACUCCGGCUGCAUUGGUGCGCACUUUGAAA
.((..((.(((((((((.(((.((.((((((....))....(((((.........)))))..........(((((.......)))))....)))))).))).))))))))).)).))... ( -45.20)
>DroYak_CAF1 10931 120 - 1
GCAUUGGAGCGCACCAGAGCGUCCAGGAGGGAACGCCAUACCUGCGGAAAGUGGGUGCUGAAGUCCUGACGCUGCUCGACCUGCAGCAGAACUCCGGCUGCAUUGGUGCGCACUUUGAAG
.((..(..(((((((((.(((.((.(((((((...(..((((..(.....)..))))..)...)))....(((((.......)))))....)))))).))).))))))))).)..))... ( -52.70)
>consensus
GCAUUAGAGCGCACCAGAGCGUCCAGGAGGGAACGCCAUACCAGCGGAAAGUGGGCGCUGAAGUCCUGACGCUGCUCGACCUGCAGCAGAACUCCGGCUGCAUUGGUGCGCACUUUGAAG
........(((((((((.(((.((.((((................(((.(((....)))....)))....(((((.......)))))....)))))).))).)))))))))......... (-42.81 = -41.93 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:32 2006