| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,204,286 – 5,204,377 |
| Length | 91 |
| Max. P | 0.987448 |
| Location | 5,204,286 – 5,204,377 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 63.98 |
| Mean single sequence MFE | -21.82 |
| Consensus MFE | -10.99 |
| Energy contribution | -12.80 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.14 |
| Structure conservation index | 0.50 |
| SVM decision value | 2.08 |
| SVM RNA-class probability | 0.987448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5204286 91 + 22224390 ------------AACCGGAACACGUGUCGUAUACGUUUUAUUUGCUUACAAUAAAAUUACGCAUACGACAUG-AUGUCCGA---------AAACUUUUGCAUUCAACUAAGAU ------------...((((.((((((((((((.(((((((((.......))))))...))).))))))))))-.)))))).---------....................... ( -23.50) >DroSec_CAF1 24884 93 + 1 ------------AAGCGGAACACGUGUCG------UUUUAUUUUCUUACAA-AAAAUUACGCAUACGACAUG-AUGUCCGUAUCAUACUGAAACUUCAGAUUUCAACUCAGUU ------------..(((((.(((((((((------(...(((((.......-))))).......))))))))-.)))))))......((((....)))).............. ( -20.60) >DroSim_CAF1 18541 99 + 1 ------------AAGCGGAACACGUGUCGUAUACGUUUUAUUUUCUUACAA-AAAAUUACACAUACGACCUG-UUGUCCGUAUCAAACUGAAACUUUAGCUUUCAACUCAGUU ------------..(((((..(((.(((((((..((...(((((.......-))))).))..))))))).))-)..)))))....((((((................)))))) ( -20.89) >DroAna_CAF1 29022 106 + 1 CUUAAAUGGGAAAAUCGGCCUAUGGGGCGUAUGAGUGAUAUUUGGACCCA--CAAAUCACGUAUACGACUAGUAUGACAGAGCCA---UUAAACUCUUUGCUUGAA--AGGAA ....(((((.....(((..(((.(...((((((.(((((..(((......--)))))))).)))))).))))..))).....)))---))....(((((......)--)))). ( -22.30) >consensus ____________AAGCGGAACACGUGUCGUAUACGUUUUAUUUGCUUACAA_AAAAUUACGCAUACGACAUG_AUGUCCGAAUCA___UGAAACUUUAGCUUUCAACUAAGAU ..............(((((...((((((((((..((...(((((........))))).))..))))))))))....)))))................................ (-10.99 = -12.80 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:50 2006