Locus 1862

Sequence ID X_DroMel_CAF1
Location 5,132,953 – 5,133,048
Length 95
Max. P 0.845353
window3029

overview

Window 9

Location 5,132,953 – 5,133,048
Length 95
Sequences 4
Columns 95
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -21.80
Consensus MFE -21.80
Energy contribution -21.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.42
Structure conservation index 1.00
SVM decision value 0.77
SVM RNA-class probability 0.845353
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5132953 95 + 22224390
UAAAGCAAGGCAAGCGUCGAAAAUCUGUACAGACCAUUGCCCAAAGGGCAAACACUUCACUUAUUGUUAUCCAGGCACAUAAAUAAAGUGCCACA
...((((((((....)))(((..(((....)))...((((((...))))))....))).....))))).....(((((.........)))))... ( -21.80)
>DroSec_CAF1 9165 95 + 1
UAAAGCAAGGCAAGCGUCGAAAAUCUGUACAGACCAUUGCCCAAAGGGCAAACACUUCACUUAUUGUUAUCCAGGCACAUAAAUAAAGUGCCACA
...((((((((....)))(((..(((....)))...((((((...))))))....))).....))))).....(((((.........)))))... ( -21.80)
>DroSim_CAF1 8937 95 + 1
UAAAGCAAGGCAAGCGUCGAAAAUCUGUACAGACCAUUGCCCAAAGGGCAAACACUUCACUUAUUGUUAUCCAGGCACAUAAAUAAAGUGCCACA
...((((((((....)))(((..(((....)))...((((((...))))))....))).....))))).....(((((.........)))))... ( -21.80)
>DroYak_CAF1 10069 95 + 1
UAAAGCAAGGCAAGCGUCGAAAAUCUGUACAGACCAUUGCCCAAAGGGCAAACACUUCACUUAUUGUUAUCCAGGCACAUAAAUAAAGUGCCACA
...((((((((....)))(((..(((....)))...((((((...))))))....))).....))))).....(((((.........)))))... ( -21.80)
>consensus
UAAAGCAAGGCAAGCGUCGAAAAUCUGUACAGACCAUUGCCCAAAGGGCAAACACUUCACUUAUUGUUAUCCAGGCACAUAAAUAAAGUGCCACA
...((((((((....)))(((..(((....)))...((((((...))))))....))).....))))).....(((((.........)))))... (-21.80 = -21.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:30 2006