Locus 1860

Sequence ID X_DroMel_CAF1
Location 5,132,180 – 5,132,280
Length 100
Max. P 0.656431
window3025

overview

Window 5

Location 5,132,180 – 5,132,280
Length 100
Sequences 4
Columns 100
Reading direction forward
Mean pairwise identity 92.49
Mean single sequence MFE -29.53
Consensus MFE -25.27
Energy contribution -25.28
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.56
Structure conservation index 0.86
SVM decision value 0.26
SVM RNA-class probability 0.656431
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 5132180 100 + 22224390
CCGCAUGUCCCUGUAUCCUUAUGUCCCAGUGUCCUGUCCGUUUGGAUGCGGGCAUUAUGCGUGGGCACAAUGCAUUAGUUAAAUGUAACAAAAGCGUUCA
.(((.(((((.(((((....(((.(((.((((((.........)))))))))))).))))).)))))...((((((.....))))))......))).... ( -30.60)
>DroSec_CAF1 8447 100 + 1
CCGCAUGUCCCUGUAUCCUUAUGUCCCAGUGUCCUGUCCGUAUGGAUGCGGGCAUUAUGCGUGGGCACAAUGCAUUAGUUAAAUGUAACAAAAGCGUCCA
.((((((..(((((((((.((((...(((....)))..)))).)))))))))...))))))(((((.(..((((((.....))))))......).))))) ( -33.00)
>DroSim_CAF1 8220 91 + 1
---------CCUGUAUCCUUAUGUCCCAGUGUCCUGUCCGUAUGGAUGCGGGCAUUAUGCGUGGGCACAAUGCAUUAGUUAAAUGUAACAAAAGCGUCCA
---------............(((((((((((..((((((((....))))))))..)))).)))).)))((((.((.((((....)))).)).))))... ( -25.80)
>DroYak_CAF1 9309 99 + 1
CCC-UGCUCCCUGUAUCCCUAUGUCCCAGUGUCCUGUCCGUAUGGAUGCGGGCAUUAUGCGUGGGCACAAUGCAUUAGUUAAAUGUAACAAAAGCGUCCA
...-.(((...(((.......(((((((((((..((((((((....))))))))..)))).)))).))).((((((.....)))))))))..)))..... ( -28.70)
>consensus
CCG_AUGUCCCUGUAUCCUUAUGUCCCAGUGUCCUGUCCGUAUGGAUGCGGGCAUUAUGCGUGGGCACAAUGCAUUAGUUAAAUGUAACAAAAGCGUCCA
.....................(((((((((((..(((((((......)))))))..)))).)))).)))((((.((.((((....)))).)).))))... (-25.27 = -25.28 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:27 2006