| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,129,190 – 5,129,292 |
| Length | 102 |
| Max. P | 0.913303 |
| Location | 5,129,190 – 5,129,292 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 84.55 |
| Mean single sequence MFE | -36.10 |
| Consensus MFE | -21.86 |
| Energy contribution | -22.64 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.57 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.913303 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5129190 102 - 22224390 CCGUUGAAUGGCGACAUUUUGAUUUUCAGCUCAUGGGGUUUUUGGGUGGAAAAAUUACCAAAAAGUCCCAUUGGCUUGAA-------------AGUAAGGUUUGAAGUUCAGCGA .((((((((..(((.(((((.((((((((((.(((((..((((.(((((.....))))).))))..))))).))).))))-------------)))))))))))..)))))))). ( -39.80) >DroSec_CAF1 5563 113 - 1 CCGUGGAAUGGCGACAUUUUGAUUUCCAGCUCAUGGGGUU-UUGGGUGGGAAAAUUACCAAAAAGUC-CUUUGGCUUGGAAACUGGGAAACUCAGUAAGGUUUGAAGUUGAAUAU ((..((((((....))))))...(((((((.((.(((..(-((...(((........))).)))..)-)).)))).)))))(((((....).))))..))............... ( -32.00) >DroSim_CAF1 5287 113 - 1 CCGUUGAAUGGCGACAUUUUGAUUUCCAGCUCAUGGGGUU-UUGGGUGGGAAAAUUACCAAAAAGUC-CAUUGGCUUGGAAACUAAGAAACUAAGUAAGGUUUGAAGUUCAACAA ..(((((((..(((..(((((.(((((((((.(((((.((-((.(((((.....))))).)))).))-))).))).)))))).))))).(((......))))))..))))))).. ( -36.50) >consensus CCGUUGAAUGGCGACAUUUUGAUUUCCAGCUCAUGGGGUU_UUGGGUGGGAAAAUUACCAAAAAGUC_CAUUGGCUUGGAAACU__GAAACU_AGUAAGGUUUGAAGUUCAACAA ..(((((((..(((.((((((.(((((((((.(((((.((.((((............)))).)).)).))).))).)))))).............)))))))))..))))))).. (-21.86 = -22.64 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:24 2006