| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 5,017,175 – 5,017,278 |
| Length | 103 |
| Max. P | 0.725530 |
| Location | 5,017,175 – 5,017,278 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 77.17 |
| Mean single sequence MFE | -24.63 |
| Consensus MFE | -14.83 |
| Energy contribution | -14.95 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725530 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5017175 103 - 22224390 GCGCAAAAAAGAGGGAGAGCGAGAAGCGCGGGGAGGAGAGACACGAGAUCCAUUAAUUUCAUUUCGCUAUUUUUCUUAAACGUCUUUU-UUUUGCGUUUUUUUU (((((((((((((.....((.....))(((...((((((((..((((((...........))))))...))))))))...))))))))-))))))))....... ( -28.70) >DroSec_CAF1 83176 94 - 1 GCGCAAAAAAGAGAAAGAUAGA----------GGGGAGAGACACGAGAUCCAUUAAUUUCAUUUCGCUAUUUUUCUCAAACGUCUUUUUUUUUGCGUUUUGUUU (((((((...(((((((((...----------.((((((((..((((((...........))))))...))))))))....))))))))))))))))....... ( -24.70) >DroYak_CAF1 84598 92 - 1 GCGCACGAAAGAGA--------GAAGCGCUGAGGAGAAAAACACGAGAUCCAUUAAUUUCAUUUCGCUAUUUUUCUCAAACGUUUUU----UUCCGUUUUUUUU ....(((...((((--------((((((.....((((((((..((((((...........))))))...))))))))...)))))))----))))))....... ( -20.50) >consensus GCGCAAAAAAGAGA_AGA__GAGAAGCGC_G_GGGGAGAGACACGAGAUCCAUUAAUUUCAUUUCGCUAUUUUUCUCAAACGUCUUUU_UUUUGCGUUUUUUUU ((((((((((((((...................((((((((..((((((...........))))))...)))))))).....)))))).))))))))....... (-14.83 = -14.95 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:19 2006