| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,955,094 – 4,955,200 |
| Length | 106 |
| Max. P | 0.576587 |
| Location | 4,955,094 – 4,955,200 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.12 |
| Mean single sequence MFE | -30.23 |
| Consensus MFE | -17.27 |
| Energy contribution | -19.88 |
| Covariance contribution | 2.61 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.576587 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4955094 106 - 22224390 CCAAUAAUAACAACAAUCGUUGGUGCGGCAUGUUGGCAAUGCCCCCGAA-A---UGGGGGCGUGUCGAACAUGAUUACCAGAGCAGCAACUACUUAG-GCACAUAAUUG-AC .((((.....((((....))))((((((((((((((((.(((((((...-.---.))))))))))).))))))....)).(((.((...)).)))..-))))...))))-.. ( -35.60) >DroSec_CAF1 19618 106 - 1 GCAAUAAUAACAACAAUCGUAGGUGCGGCAUGUUGGCAACGCCCCCGAA-A---UGGGGGCGUGUCGAACACGAUUACCAGAGCAGCAACUACUUAG-GCACAUAAUUG-AC ..................((((.(((.((...((((..((((((((...-.---.))))))))((((....))))..)))).)).))).))))....-...........-.. ( -33.20) >DroSim_CAF1 13984 106 - 1 GCAAUAAUAACAACAAUCGCAGGUGCGGCACGUUGGCAACGCCCCCGAA-A---AGGGGGCGUGUCGAACACGAUUACCAGAGCAGCAACUACUUAG-GCACAUAAUUG-AC .((((.........(((((...((.((((((...(....)((((((...-.---.)))))))))))).)).))))).((.(((.((...)).))).)-)......))))-.. ( -34.20) >DroEre_CAF1 22103 106 - 1 GCAAUAAUAACAACAAUCGAUGGUGCGGCAUGUAGCCACCGCCCACAAA-A---UGGGGGCGUGUCGUACAUGAUUACCAGAGCAGCAACUACUUAG-GCACAUAAUUG-AC ................(((((.((((((((((((.(.(((((((.(...-.---.).))))).)).)))))))....)).(((.((...)).)))..-))))...))))-). ( -27.00) >DroYak_CAF1 21583 106 - 1 GCAAUAAUAACAACAAUCGAAGGUGCUGCAUGUAGCCAACGCCCCCAAA-A---UGGGGGCGUGUCGAACAUGAUUACCAGAGCAGCAACUACUUAG-GCACAUAAUUG-AC .............((((.....(((((.(((((.....((((((((...-.---.)))))))).....))))).......(((.((...)).))).)-))))...))))-.. ( -31.10) >DroPer_CAF1 23503 94 - 1 UCCGCA--CACAAGUAUC--------AGCA-------GGAGCCCCCGUAAAUGAUGGAAGGAUGU-AAACAUGAUUACCAACGCAGCCGCUACUUGCGGGCCAUAAUUGGAC ((((((--....((((.(--------.((.-------((.....))........(((((..(((.-...)))..)).))).....)).).))))))))))(((....))).. ( -20.30) >consensus GCAAUAAUAACAACAAUCGAAGGUGCGGCAUGUUGGCAACGCCCCCGAA_A___UGGGGGCGUGUCGAACAUGAUUACCAGAGCAGCAACUACUUAG_GCACAUAAUUG_AC .....................((((...((((((....(((((((((.......)))))))))....))))))..))))................................. (-17.27 = -19.88 + 2.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:00 2006