| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,886,316 – 4,886,426 |
| Length | 110 |
| Max. P | 0.530131 |
| Location | 4,886,316 – 4,886,426 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 97.72 |
| Mean single sequence MFE | -21.80 |
| Consensus MFE | -19.54 |
| Energy contribution | -19.35 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.90 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.530131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4886316 110 - 22224390 AACAUUUCCCACUCUCUUUCUUAACCUUUUAUUGCUUUCUUAUGUAAUUUUCGUCGACGUUGUUGUGCUUGCUGUUUGUUCAUUGGCAGCAAUUAUGCAAUGAUCAGGUA .......................((((.(((((((........(((.....((....))......)))((((((((........))))))))....)))))))..)))). ( -21.70) >DroSim_CAF1 38591 109 - 1 AACAUUUCCCACUCUCUUUCUUAACCUUUUAUUGCUUUCUUAUGUAAUUUUCGUCGACGUUGUUGUGCUUGCUGU-UGUUCAUUGGCAGCAAUUAUGCAAUGAUCAGGUA .......................((((.(((((((........(((.....((....))......)))(((((((-((.....)))))))))....)))))))..)))). ( -21.70) >DroEre_CAF1 40550 109 - 1 AACAUUUCCCACUCUCUUUCUUAACCUUUUAUUGCUUUCUUAUGUAAUUUUCGUGGACGUUGUUGUGCUUGCCGU-UGUUCAUUGGCAGCAAUUAUGCAAUGAUCAGGUA .......................((((...(((((........))))).......((((((((..((((.((((.-.......)))))))).....)))))).)))))). ( -22.10) >DroYak_CAF1 38484 109 - 1 CAAAUUUCCCACUCUCUUUCUUAACCUUUUAUUGCUUUCUUAUGUAAUUUUCGUCGACGUUGUUGUGCUUGCUGU-UGUUCAUUGGCAGCAAUUAUGCAAUGAUCAGGUA .......................((((.(((((((........(((.....((....))......)))(((((((-((.....)))))))))....)))))))..)))). ( -21.70) >consensus AACAUUUCCCACUCUCUUUCUUAACCUUUUAUUGCUUUCUUAUGUAAUUUUCGUCGACGUUGUUGUGCUUGCUGU_UGUUCAUUGGCAGCAAUUAUGCAAUGAUCAGGUA .......................((((...(((((........))))).......((((((((..((((.((((.........)))))))).....)))))).)))))). (-19.54 = -19.35 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:32 2006