| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,882,706 – 4,882,805 |
| Length | 99 |
| Max. P | 0.576047 |
| Location | 4,882,706 – 4,882,805 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 80.93 |
| Mean single sequence MFE | -19.30 |
| Consensus MFE | -8.55 |
| Energy contribution | -8.55 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.99 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.576047 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4882706 99 + 22224390 GCGACAUUACGAACCCGCUAGUGUCAUAAAAAAAAAAAAAAACCAAACAAAAAUCUAAGGGCUAAGAAAGAAAAUUUUUCU----UUCCAUCUAGUACUUACA ..(((((((((....)).)))))))..............................((((..(((.(((((((.....))))----)))....)))..)))).. ( -18.70) >DroSim_CAF1 35107 93 + 1 GCGACAUUACGAACCCGCUAGUGUCAUAAAAA------AAACCCAAACAAAAACCUGAGGGAUAAGAAAGAAAAUUUGUAU----UUCCAGCUAGUACGUACG (((((((((((....)).))))))).......------................(((.(..(((.(((......))).)))----..)))).......))... ( -14.50) >DroEre_CAF1 36845 86 + 1 GUGACAUUACGAACCCGCUAGUGUCAUAAAAA-----------CAAACAAAAA-CUGAGAGCUAAGAAAGAAAAUUUUCU-----UUCCAGCCAGUACUUACA (((((((((((....)).))))))))).....-----------.........(-(((...(((..(((((((....))))-----))).)))))))....... ( -20.80) >DroYak_CAF1 34726 91 + 1 GUGACAUUACGAACCCGCUAGUGUCGUAAAAA-----------CAAACAAAAA-CUGAGAGCUAAGAAGGAAAACUUUUUUUUUCUUCUUGCUAGUACUUACA ..(((((((((....)).)))))))((((..(-----------(...((....-.))..(((.(((((((((((.....)))))))))))))).))..)))). ( -23.20) >consensus GCGACAUUACGAACCCGCUAGUGUCAUAAAAA___________CAAACAAAAA_CUGAGAGCUAAGAAAGAAAAUUUUUUU____UUCCAGCUAGUACUUACA ..(((((((((....)).))))))).............................................................................. ( -8.55 = -8.55 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:26 2006