| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,881,283 – 4,881,373 |
| Length | 90 |
| Max. P | 0.640659 |
| Location | 4,881,283 – 4,881,373 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 78.62 |
| Mean single sequence MFE | -15.23 |
| Consensus MFE | -7.79 |
| Energy contribution | -7.57 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.640659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4881283 90 - 22224390 CCCGCCUCCUCCCACUCUCUCUCUCUCUCUCUCACGACAUUAACUAAAAAUGUAGCGAUGAGUUCGUGAUUUCAUCGAAUAAU------------AUAUUUA ...............................................(((((((.(((((((........))))))).....)------------)))))). ( -11.10) >DroSec_CAF1 32568 92 - 1 CCCGCCUCCUCCCACUCUCUCUCUCU----------ACAUUAACUAAAAAUGUAGCGAUGAGUUCGUGAUUUUAUCGAAUAAUCGAGCAUUCAACAUAUUUA ...((.......(((...(((((.((----------(((((.......))))))).)).)))...)))......((((....)))))).............. ( -18.20) >DroSim_CAF1 33764 79 - 1 CCCGCCUCCUCCCACUCUCUCUCUCU----------ACAUUAACUAAAAAUGUAGCGAUGAGUUCGUGAUUUUAUCGAAUAAUCGAAUA------------- ............(((...(((((.((----------(((((.......))))))).)).)))...)))......((((....))))...------------- ( -16.40) >consensus CCCGCCUCCUCCCACUCUCUCUCUCU__________ACAUUAACUAAAAAUGUAGCGAUGAGUUCGUGAUUUUAUCGAAUAAUCGA__A______AUAUUUA ....................................(((((.......)))))..(((((((........)))))))......................... ( -7.79 = -7.57 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:24 2006