Locus 1761

Sequence ID X_DroMel_CAF1
Location 4,878,952 – 4,879,054
Length 102
Max. P 0.527777
window2881

overview

Window 1

Location 4,878,952 – 4,879,054
Length 102
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.06
Mean single sequence MFE -17.66
Consensus MFE -17.82
Energy contribution -17.66
Covariance contribution -0.16
Combinations/Pair 1.06
Mean z-score -1.09
Structure conservation index 1.01
SVM decision value -0.01
SVM RNA-class probability 0.527777
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4878952 102 + 22224390
CGACGUCAAGGCCAAGGCCAAAAAGGCCGGUCGACAGACAAUCGUUUGCUUCGUUAUUUUCUAAGCCGCUCCAACUACCAAAAA-AA-----------------CCAUACCAAACACAAA
.((((....((((..((((.....))))))))(.(((((....))))))..)))).............................-..-----------------................ ( -18.00)
>DroSec_CAF1 30228 109 + 1
CGACGUCAAGGCCAAGGCCAAAAAGGCCGGUCGACAGACAAUCGUUUGCUUCGUUAUUUUCUAAGCCGCUCCAACUACCAAAAA-AAA----------AAAUAUGUAUACCAAACACAAA
.((((....((((..((((.....))))))))(.(((((....))))))..)))).............................-...----------...................... ( -18.00)
>DroSim_CAF1 31484 110 + 1
CGACGUCAAGGCCAAGGCCAAAAAGGCCGGUCGACAGACAAUCGUUUGCUUCGUUAUUUUCUAAGCCGCUCCAACUACCAAAAAAAAA----------AAAUAUGUAUACCAAACACAAA
.((((....((((..((((.....))))))))(.(((((....))))))..)))).................................----------...................... ( -18.00)
>DroEre_CAF1 33153 119 + 1
CGACGUCAAGGCCAAGGCCAAAAAGGCCGGUCGACAGACAAUCGUUUGCUUCGUUAUUUUCUAAACCGCUCCAACUACCAAAAA-AAAAAACCAAAAAAAAAAAAAUUACCAAACACAAA
.((((....((((..((((.....))))))))(.(((((....))))))..)))).............................-................................... ( -18.00)
>DroYak_CAF1 30976 112 + 1
CGACGUCAAGGCCAAGGCCAAAAAGGCUGGUCGACAGACAAUCGUUUGCUUCGUUAUUUUCUAAACCGCUCCAACUACCGAAAA-AAAAA-------CAAAAAAAAAUACCAAAUACAAA
.((((....(((((..(((.....))))))))(.(((((....))))))..)))).............................-.....-------....................... ( -16.30)
>consensus
CGACGUCAAGGCCAAGGCCAAAAAGGCCGGUCGACAGACAAUCGUUUGCUUCGUUAUUUUCUAAGCCGCUCCAACUACCAAAAA_AAA__________AAAAAAAAAUACCAAACACAAA
.((((....((((..((((.....))))))))(.(((((....))))))..))))................................................................. (-17.82 = -17.66 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:18 2006