| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 636,117 – 636,208 |
| Length | 91 |
| Max. P | 0.774372 |
| Location | 636,117 – 636,208 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 98.53 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -19.92 |
| Energy contribution | -19.70 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.99 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.774372 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 636117 91 - 22224390 CUUCACCCCCCUCGGUCAUGAUGAUCCCCAUAUCUCCUCCGACUCUCCAGUCUGCGAAGCGAAUGCAAUCUGCAACGCUUUGGGCAUUUUU .............((((.....))))(((...........((((....))))...((((((..(((.....))).)))))))))....... ( -18.80) >DroSec_CAF1 1413 91 - 1 CUUCACCCCCCUCGGUCAUGAUGCUCCCCAUAUCUCCUCCGACUCUCCAGUCUGCGAAGCGAAUGCAAUCUGCAACGCUUUGGGCAUUUUU ....(((......)))...((((((...............((((....))))..(((((((..(((.....))).)))))))))))))... ( -20.30) >DroSim_CAF1 3430 91 - 1 CUUCACCCCCCUCGGUCAUGAUGCUCCCCACAUCUCCUCCGACUCUCCAGUCUGCGAAGCGAAUGCAAUCUGCAACGCUUUGGGCAUUUUU ...........((((....((((.......))))....)))).......(((..(((((((..(((.....))).))))))))))...... ( -21.20) >consensus CUUCACCCCCCUCGGUCAUGAUGCUCCCCAUAUCUCCUCCGACUCUCCAGUCUGCGAAGCGAAUGCAAUCUGCAACGCUUUGGGCAUUUUU ...........((((....((((.......))))....)))).......(((..(((((((..(((.....))).))))))))))...... (-19.92 = -19.70 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:09 2006