| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,859,724 – 4,859,834 |
| Length | 110 |
| Max. P | 0.921688 |
| Location | 4,859,724 – 4,859,834 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 90.18 |
| Mean single sequence MFE | -29.10 |
| Consensus MFE | -25.99 |
| Energy contribution | -26.00 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.921688 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4859724 110 + 22224390 CUGCGAGGCAAAGCCCACUCGCCAAGCGAUCGCCAACACGCCCACAUCCUCGGGCCAGCGAAAUAAAAACCACGAUGGGCCGAGCUUUGCGCUCAUUUAUUUUUAUUUUU ..(((((((...(((((.((((...))))((((......((((........))))..))))..............)))))...))))))).................... ( -32.80) >DroEre_CAF1 13050 106 + 1 CUGCGAAGCUAAGCCCACUCGCCAACCGAUC--CAACACGCCCACAACCUCGGGCCAGCGAAAUAAAAACCACGAUGGGCUGAGUUUUGCGCUCAUUUAUUUUUAUUU-- ..((((((((.((((((.(((......(...--...)..((((........)))).................))))))))).))))))))..................-- ( -29.50) >DroYak_CAF1 11754 106 + 1 CUGCAAAGCUAAGCCCACUCGCCAGCCGAUC--CAACACGCCCACAACCUCGGGCCAGCAAAAUAAAAACCACGAUAGGCUGCGCUUUGCGCUCAUUUAUUUAUAUUU-- ..(((((((...((......))(((((.(((--......((((........)))).(......).........))).))))).)))))))..................-- ( -25.00) >consensus CUGCGAAGCUAAGCCCACUCGCCAACCGAUC__CAACACGCCCACAACCUCGGGCCAGCGAAAUAAAAACCACGAUGGGCUGAGCUUUGCGCUCAUUUAUUUUUAUUU__ ..(((((((..((((((.(((.....)))..........((((........))))....................))))))..))))))).................... (-25.99 = -26.00 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:58 2006