Locus 1726

Sequence ID X_DroMel_CAF1
Location 4,803,954 – 4,804,047
Length 93
Max. P 0.983506
window2833

overview

Window 3

Location 4,803,954 – 4,804,047
Length 93
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 96.66
Mean single sequence MFE -22.51
Consensus MFE -22.30
Energy contribution -22.30
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.53
Structure conservation index 0.99
SVM decision value 1.95
SVM RNA-class probability 0.983506
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4803954 93 + 22224390
C----CAAUCCUUGCCAGCUCAGACAUCACCCACUGCAUUUGCCACAUCUUAGAUAAGUGCAUUGUGCAUUGCAUGCAAUUUGGUUGCAUGUAUUGC
.----..........................((.((((((((.(........).)))))))).)).(((.((((((((((...)))))))))).))) ( -22.30)
>DroSec_CAF1 11106 97 + 1
CCGUCCAAUCCUCGCCAGCUCAGACAUCACCCACUGCAUUUGCCACAUCUUAGAUAAGUGCAUUGUGCAUUGCAUGCAAUUUGGUUGCAUGUAUUGC
..(((.................)))......((.((((((((.(........).)))))))).)).(((.((((((((((...)))))))))).))) ( -22.83)
>DroSim_CAF1 11040 97 + 1
CCGUCCAAUCCUCGCCAGCUCAGACAUCACCCACUGCAUUUGCCACAUCUUAGAUAAGUGCAUUGUGCAUUGCAUGCAAUUUGGUUGCAUGUAUUGC
..(((.................)))......((.((((((((.(........).)))))))).)).(((.((((((((((...)))))))))).))) ( -22.83)
>DroEre_CAF1 17263 93 + 1
C----CGAUCCUCGCCAGCUCAGACAUCACCCACUGCAUUUGCCACAUCUUAGAUAAGUGCAUUGUGCAUUGCAUGCAAUUUGGUUGCAUGUAUUGC
.----..........................((.((((((((.(........).)))))))).)).(((.((((((((((...)))))))))).))) ( -22.30)
>DroYak_CAF1 11106 93 + 1
C----CAAUCCUCGCCAGCUCAGACAUCACCCACUGCAUUUGCCACAUCUUAGAUAAGUGCAUUGUGCAUUGCAUGCAAUUUGGUUGCAUGUAUUGC
.----..........................((.((((((((.(........).)))))))).)).(((.((((((((((...)))))))))).))) ( -22.30)
>consensus
C____CAAUCCUCGCCAGCUCAGACAUCACCCACUGCAUUUGCCACAUCUUAGAUAAGUGCAUUGUGCAUUGCAUGCAAUUUGGUUGCAUGUAUUGC
...............................((.((((((((.(........).)))))))).)).(((.((((((((((...)))))))))).))) (-22.30 = -22.30 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:35 2006