| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,795,357 – 4,795,447 |
| Length | 90 |
| Max. P | 0.540434 |
| Location | 4,795,357 – 4,795,447 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 65.45 |
| Mean single sequence MFE | -28.00 |
| Consensus MFE | -9.90 |
| Energy contribution | -9.68 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.540434 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4795357 90 + 22224390 AUGAGGUGAAGGUGCACGCCAUUAGCCACGGAGUGCGAAGCGAACCGCACUCCUAUUUCCAAGCAGUUUGUAAGUAUUUU--ACUAACUGCA------------------------- ....(((...(((....)))....)))..((((((((........)))))))).........((((((.(((((...)))--)).)))))).------------------------- ( -32.40) >DroPse_CAF1 4065 91 + 1 AUGAGAUCAAGGUGUAUGCCAUCAGUCAUGGCAUACGCAGUGAGCCGCACUCCUACUUCCAAGCUGUCUGUGAGUGCAUCCUCCUAUUUG----C---------------------- ..(((.(((..(((((((((((.....)))))))))))..)))...(((((((.((.........))..).))))))...))).......----.---------------------- ( -31.80) >DroSim_CAF1 2502 115 + 1 AUGAGGUGAAGGUGCACGCCAUCAGCCACGGAGUGCGAAGCGAACCGCACUCCUACUUUCAAGCAGUUUGUAAGUAUUUA--ACUUCUUUAAAACAGGGAUUACGGAAAGUUCCACU ....(((((.(((....))).))).))..((((((((........))))))))(((((.((((...)))).)))))....--..............((((((......))))))... ( -31.80) >DroWil_CAF1 15864 84 + 1 ACGAGAUUAAGGUCUAUGCGAUCAGUCAUGAAAUGCGUAGCGAGCCGCAUUCCUAUUUCCAGGCAGUGUGUAAGUAGUGU--G------A-AU------------------------ (((..(((..((((((((((.(((....)))..)))))))...)))((((((((......))).)))))...)))..)))--.------.-..------------------------ ( -18.30) >DroMoj_CAF1 74801 100 + 1 ACGAGAUCAAGGUCUACGCCAUAAGUCACGAAAUGCGCAGCGAACCGCAUGCCUAUUUCCAGGCCGUCUGUAAGUGUUGA--GCCAGUUGCUAUCAGAGAAU--------------- .((((((....)))).)).....(((.((((((((.((((((...))).))).))))))..(((((.(.......).)).--))).)).)))..........--------------- ( -21.50) >DroPer_CAF1 3284 91 + 1 AUGAGAUCAAGGUGUAUGCCAUCAGUCAUGGCAUACGCAGUGAACCGCACUCCUACUUCCAAGCUGUCUGUGAGUGCAUCCUCCUCUUUU----C---------------------- ..(((.(((..(((((((((((.....)))))))))))..)))...(((((((.((.........))..).))))))......)))....----.---------------------- ( -32.20) >consensus AUGAGAUCAAGGUGUACGCCAUCAGUCACGGAAUGCGCAGCGAACCGCACUCCUACUUCCAAGCAGUCUGUAAGUAUUUA__ACUAUUUG_A__C______________________ ....(((...(((....)))....)))..((.(((((........))))).))(((((.((.......)).)))))......................................... ( -9.90 = -9.68 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:30 2006