Locus 1714

Sequence ID X_DroMel_CAF1
Location 4,779,358 – 4,779,478
Length 120
Max. P 0.535627
window2812

overview

Window 2

Location 4,779,358 – 4,779,478
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 85.56
Mean single sequence MFE -22.58
Consensus MFE -15.54
Energy contribution -15.77
Covariance contribution 0.23
Combinations/Pair 1.22
Mean z-score -1.98
Structure conservation index 0.69
SVM decision value 0.00
SVM RNA-class probability 0.535627
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4779358 120 - 22224390
AGUGAUUUAAAUUGUUGCUAAGUAAAUAGCAACAAAAAUGUCGGUUUAUCUGAGGUAAAUUUAAAUGAAUUCGUGGCAUAACUUACUAAUAAUAGAAAAGAGGCAAAACUUACACGCAUU
..(.((((((((((((((((......)))))))....((.((((.....)))).)).))))))))).)...((((..........(((....)))....(((......))).)))).... ( -22.50)
>DroSec_CAF1 18353 120 - 1
AGUGAAAUAAAUUAUUGCUAAUAAAAUAGCAAUAAAAGUGUCUGUUCAUUCAAGGUAAAUUUAAUUAAAUUCAUGCCAUAACGUGUUAAUAUUACAAAAGAAGCAGAAUUUAGACGCAUU
...........(((((((((......)))))))))..(((((((...((((..(((((((((....)))))..)))).....(((.......)))..........)))).)))))))... ( -24.40)
>DroSim_CAF1 13155 120 - 1
AGUGAAAUAAAUUGUUGCUAAUAAAAUAGCAAUAAAAGUGUCUGUUCAUUUAAGGUAAAUAUAAUUAAAUUCAUGCCAUAACGUGUUAAUAUUAGAAAAGAAGCAGAAUUUAGACGCAUU
...........(((((((((......)))))))))..((((((((((......((((...((......))...))))......((((..............))))))))..))))))... ( -20.84)
>consensus
AGUGAAAUAAAUUGUUGCUAAUAAAAUAGCAAUAAAAGUGUCUGUUCAUUUAAGGUAAAUUUAAUUAAAUUCAUGCCAUAACGUGUUAAUAUUAGAAAAGAAGCAGAAUUUAGACGCAUU
...........(((((((((......)))))))))..((((((((((......(((((((((....)))))..))))......((((..............))))))))..))))))... (-15.54 = -15.77 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:16 2006