Locus 1713

Sequence ID X_DroMel_CAF1
Location 4,778,972 – 4,779,082
Length 110
Max. P 0.927054
window2811

overview

Window 1

Location 4,778,972 – 4,779,082
Length 110
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 79.94
Mean single sequence MFE -25.90
Consensus MFE -18.33
Energy contribution -18.67
Covariance contribution 0.34
Combinations/Pair 1.12
Mean z-score -2.09
Structure conservation index 0.71
SVM decision value 1.18
SVM RNA-class probability 0.927054
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4778972 110 + 22224390
ACGAAAAUCGACUAGAGGUGGUGGAGA---------AACAUCGAUGCCAAACAUCGAUAUUUUCGAAAAAUCACAUAAAUUGGUGU-UUUUUGAUGAAUCAUUUUAUUCAAAUUUUUGAU
.(((((((......((((((((.....---------...(((((((.....)))))))....((((((((.(((........))))-)))))))...))))))))......))))))).. ( -23.70)
>DroSec_CAF1 15962 114 + 1
ACGAAAAUCGACUAGAGGUGGAGAAAAAUUGAUGCCAACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUGU-UUUUCGAGGAAUCAUCGUAU--AAAUUGUA---
((((...((.((.....)).)).......((((.((...(((((((.....)))))))....((((((((.(((........))))-))))))))).))))))))..--........--- ( -29.20)
>DroSim_CAF1 12767 115 + 1
ACGAAAAUCAACUAGAGGUGGGAAAACAGCGAUGCCAACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUUUUUUUUCGAGCAAUCAUCGUAU--AAAUUGUA---
((((............(.((......)).)(((((....(((((((.....)))))))....((((((((..((........))..)))))))))).))).))))..--........--- ( -24.80)
>consensus
ACGAAAAUCGACUAGAGGUGGAGAAAAA__GAUGCCAACAUCGAUGUCAAACAUCGAUAUUUUCGAAGAAUCACAAACAUCGGUGU_UUUUCGAGGAAUCAUCGUAU__AAAUUGUA___
................(((((..................(((((((.....))))))).((((((((((..(((........)))..)))))))))).)))))................. (-18.33 = -18.67 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:15 2006