| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,735,556 – 4,735,661 |
| Length | 105 |
| Max. P | 0.929442 |
| Location | 4,735,556 – 4,735,661 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.25 |
| Mean single sequence MFE | -25.08 |
| Consensus MFE | -19.42 |
| Energy contribution | -19.22 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929442 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4735556 105 - 22224390 AAAAUAUUUGCUUAAUGAAAUUGUAUGCGCGCGAGA--AUUUUUGUGUGAGUAAAAUUAAUUUCAAACAUGGAUAA-----GACGACCGUGUGGGCGAAAAAAGUGGGUAGG ....((((..(((..(((((((((((.((((((((.--...)))))))).)))....)))))))).((((((....-----.....)))))).........)))..)))).. ( -24.90) >DroVir_CAF1 5035 99 - 1 AAAAUAUUUGCUUAAUGAAAUUGUAUGCGCGCGAGAAAAUUUUUGUGUGAAUGAAAUUAAUUUCAAACAUGGCGCAUCGCCCACAGCCAGCGGCGCCGG------------- ...............(((((((((((.(((((((((....))))))))).)))....))))))))....((((((..(((.........))))))))).------------- ( -25.50) >DroSec_CAF1 28508 105 - 1 AAAAUAUUUGCUUAAUGAAAUUGUAUGCGCGCGAGA--AUUUUUGUGUGAGUAAAAUUAAUUUCAAACAUGGAUAA-----CACGACCGUGGGCGAAAAAAAGGGGGGUAGG ......((((((...(((((((((((.((((((((.--...)))))))).)))....))))))))..(((((....-----.....)))))))))))............... ( -22.50) >DroEre_CAF1 31887 100 - 1 AAAAUAUUUGCUUAAUGAAAUUGUAUGCGCGCGAGA--AUUUUUGUGCGAGUAAAAUUAAUUUCAAACAUGGAA-------CACGACCGUGGGCGGAAAA---GCGAGUGCC ....(((((((((..(((((((((((.((((((((.--...)))))))).)))....))))))))..(((((..-------.....))))).......))---))))))).. ( -28.10) >DroYak_CAF1 29704 102 - 1 AAAAUAUUUGCUUAAUGAAAUUAUAUGCGCGCGAGA--AUUUUUGUGCGAGUAAAAUUAAUUUCAAACAUGGCACA-----CACGACCGUGGGCGGAAAA---GCGGAUAGC ....(((((((((..(((((((((((.((((((((.--...)))))))).)))....))))))))..((((((...-----...).))))).......))---))))))).. ( -29.10) >DroAna_CAF1 31864 90 - 1 AAAAUAUUUGCUUAAUGAAAUUGUAUGCGCGCGAGA--AUUUUUGUGUGAAUAAAAUUAAUUUCAAACAUGGAA-------UACUGCCGUGGGCGUUAA------------- .........(((...(((((((((((.((((((((.--...)))))))).)))....))))))))..(((((..-------.....)))))))).....------------- ( -20.40) >consensus AAAAUAUUUGCUUAAUGAAAUUGUAUGCGCGCGAGA__AUUUUUGUGUGAGUAAAAUUAAUUUCAAACAUGGAA_A_____CACGACCGUGGGCGCAAAA___G_GGGUAG_ ........((((...(((((((((((.(((((((((....))))))))).)))....))))))))..(((((..............)))))))))................. (-19.42 = -19.22 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:57 2006