Locus 1692

Sequence ID X_DroMel_CAF1
Location 4,716,268 – 4,716,379
Length 111
Max. P 0.543374
window2780

overview

Window 0

Location 4,716,268 – 4,716,379
Length 111
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 79.20
Mean single sequence MFE -23.73
Consensus MFE -17.77
Energy contribution -18.02
Covariance contribution 0.25
Combinations/Pair 1.14
Mean z-score -1.47
Structure conservation index 0.75
SVM decision value 0.02
SVM RNA-class probability 0.543374
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4716268 111 - 22224390
ACGCACUGAACUGAACCGAUAAUCGGACUUACGUUGGCUUUGGCCGAAGCCAUUUGUCCGGAAUUGAUAAACACCGUUAAAAAUGGAAAAAA------AAAGUGAAAAAUAAAGCGA
.(((............((((..((((((......(((((((....)))))))...)))))).)))).......((((.....))))......------...............))). ( -25.70)
>DroSec_CAF1 9251 92 - 1
ACGCACUGAACUGAACCGAUAAUCGGACUUACGUUGGCUUUGGCCGAAACCAUUUGUCCGGAAUUGAUAAACACCGUAAAAAGCGCAAAAAA-------------------------
.(((...........(((.....)))..((((((((((....))))).....((((((.......))))))...)))))...))).......------------------------- ( -19.20)
>DroEre_CAF1 10357 95 - 1
ACGCACUGAACUGAACCGAUAAUCGGACUUACGUUGGCUUUGGCCGAAGCCAUUUGUCCGGAAUUGAUAAACACAGUAAAAUGCU---------------------GAA-AAAGCGA
.(((............((((..((((((......(((((((....)))))))...)))))).)))).......((((.....)))---------------------)..-...))). ( -26.50)
>DroYak_CAF1 10228 116 - 1
ACGCACUGAACUGAACCGAUAAUCGGACUUACGUUGGCUUUGGCCGUAGCCAUUUGUCCGGAAUUGAUAAACACCGUAAAUAGCGGAAAAAAUCGCAAAAACUGAAGAA-AAAACAA
..((............((((..((((((......(((((........)))))...)))))).)))).......((((.....))))........)).............-....... ( -23.50)
>consensus
ACGCACUGAACUGAACCGAUAAUCGGACUUACGUUGGCUUUGGCCGAAGCCAUUUGUCCGGAAUUGAUAAACACCGUAAAAAGCGGAAAAAA______________GAA_AAAGCGA
................((((..((((((......(((((((....)))))))...)))))).)))).......((((.....))))............................... (-17.77 = -18.02 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:46 2006