Locus 1687

Sequence ID X_DroMel_CAF1
Location 4,711,337 – 4,711,437
Length 100
Max. P 0.721561
window2774

overview

Window 4

Location 4,711,337 – 4,711,437
Length 100
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 81.57
Mean single sequence MFE -33.48
Consensus MFE -31.00
Energy contribution -31.88
Covariance contribution 0.88
Combinations/Pair 1.09
Mean z-score -1.31
Structure conservation index 0.93
SVM decision value 0.40
SVM RNA-class probability 0.721561
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4711337 100 - 22224390
CAUUUGUGAGCAGCAGAAUGGCGGUAGCAAUUGGCGGGGGUU-------GGGGGUAUUCAGAUACGGA------------UUCGGAUUUGGGUGCCAAGGUCUGCGAAUGUGUCAUUAG
(((((((..((.((..(((.((....)).))).)).......-------...(((((((((((.((..------------..)).)))))))))))...))..)))))))......... ( -27.20)
>DroSec_CAF1 4536 99 - 1
CAUUUGUGAGCAGCAGAAUGGCGGUAGCCAUUGGCGGGGGC--------GGCGGCAUUCAGAUACGGA------------UUCGGAUUUGGGUGCCAAGGUCUGCGAAUGUGUCAUUAG
(((((((..((.((..((((((....)))))).((....))--------.))(((((((((((.((..------------..)).)))))))))))...))..)))))))......... ( -36.40)
>DroEre_CAF1 5469 99 - 1
CAUUUGAGAGCAGCAGGAUGGCGGCAGCGAUUGGCGGG--------CAUGGAGGUAUUCGGACUCGGA------------UUCGGAUUUGGGUGCCAAGGUCUGCGAAUGUGUCAUUAG
(((((((((((.((..(((.((....)).))).))..)--------).....((((((((((..((..------------..))..))))))))))....))).))))))......... ( -30.70)
>DroYak_CAF1 5383 119 - 1
CAUUUGUGAGCAGCAGGAUGGCACUAGCGAUUGGCGGGGGGCGGAGAAGGAAGGUAUUCGGAUUCGGAUUUGGAUUUGGAUUCGGAUUUGGGUGCCAAGGUCUGCGAAUGUGUCAUUAG
...((((.....))))((((((((..((.....))......((.(((.....(((((((((((((((((((......)))))))))))))))))))....))).))...)))))))).. ( -39.60)
>consensus
CAUUUGUGAGCAGCAGAAUGGCGGUAGCGAUUGGCGGGGG_________GGAGGUAUUCAGAUACGGA____________UUCGGAUUUGGGUGCCAAGGUCUGCGAAUGUGUCAUUAG
(((((((..((.((..(((.((....)).))).)).................(((((((((((((((((((......)))))))))))))))))))...))..)))))))......... (-31.00 = -31.88 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:41 2006