Locus 1685

Sequence ID X_DroMel_CAF1
Location 4,708,288 – 4,708,405
Length 117
Max. P 0.528525
window2772

overview

Window 2

Location 4,708,288 – 4,708,405
Length 117
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 93.85
Mean single sequence MFE -35.77
Consensus MFE -29.42
Energy contribution -30.53
Covariance contribution 1.11
Combinations/Pair 1.03
Mean z-score -2.06
Structure conservation index 0.82
SVM decision value -0.01
SVM RNA-class probability 0.528525
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4708288 117 + 22224390
AUCUUUGGCUG---CUGUGGAUAAUUGCGAGCUUAAGCAUGCGCAUAAAAGUCAUUACGUCGACUGCCGCAGAACGGGCAAUUUAGAUUUAUUCUAAUUAGUGGCCCAGCCCCAGCCACC
.....((((((---((((((.....((((.((....))...))))....((((........)))).))))))...((((...(((((.....)))))......)))).....)))))).. ( -39.30)
>DroPse_CAF1 21649 118 + 1
AUCUUUGGCUGCUGCUGUGGAUAAUUGCGAGCUUAAGCAUGCGCAUAAAAGUCAUUACGUUGACUGCCACAGAACGAGCAAUUUAGAUUUAUUCUAAUUAGUGGCCCAACC--AGCGAGC
......(((..(((((((((.....((((.((....))...))))....(((((......))))).))))))..........(((((.....))))).)))..))).....--....... ( -34.00)
>DroPer_CAF1 21045 118 + 1
AUCUUUGGCUGCUGCUGUGGAUAAUUGCGAGCUUAAGCAUGCGCAUAAAAGUCAUUACGUUGACUGCCACAGAACGAGCAAUUUAGAUUUAUUCUAAUUAGUGGCCCAACC--AGCGAGC
......(((..(((((((((.....((((.((....))...))))....(((((......))))).))))))..........(((((.....))))).)))..))).....--....... ( -34.00)
>consensus
AUCUUUGGCUGCUGCUGUGGAUAAUUGCGAGCUUAAGCAUGCGCAUAAAAGUCAUUACGUUGACUGCCACAGAACGAGCAAUUUAGAUUUAUUCUAAUUAGUGGCCCAACC__AGCGAGC
......((((((((((((((.....((((.((....))...))))....(((((......))))).))))))..........(((((.....))))).)))))))).............. (-29.42 = -30.53 +   1.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:39 2006