Locus 1680

Sequence ID X_DroMel_CAF1
Location 4,703,303 – 4,703,419
Length 116
Max. P 0.578948
window2762

overview

Window 2

Location 4,703,303 – 4,703,419
Length 116
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 81.05
Mean single sequence MFE -26.10
Consensus MFE -19.04
Energy contribution -19.35
Covariance contribution 0.31
Combinations/Pair 1.05
Mean z-score -1.56
Structure conservation index 0.73
SVM decision value 0.09
SVM RNA-class probability 0.578948
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4703303 116 + 22224390
ACAUCAAACUCUGCCAGACUGCACCAGUUGCAGCUAUAAAUCUUAGCAUACCGCAGGGCGCCCAGCGCCAAGGAACUUUCCCGCUUUUCCGCC----CAACGAACACACACCCGUACCCA
...........(((..(((((...))))))))((((.......))))....((..(((((...((((....(((....)))))))....))))----)..)).................. ( -24.90)
>DroSec_CAF1 56273 100 + 1
ACAUCAAACUCAGCCAGACUGCACCAGUUGCAGCUAUAAAUCUUAGCAUACCGCAGGGCGCCCAGCGCCAAGGAACUUUCCCGCUUUUCCGCC----CACCGCC----------------
............((.....((((.....))))((((.......)))).....)).(((((...((((....(((....)))))))....))))----)......---------------- ( -23.90)
>DroEre_CAF1 57675 101 + 1
ACAUCA-ACUCUGGCAGACUGCAGCAGUUGCAGCUAUAAAUCUUAGCAUACCGCAGGGCGCCCAGUGCCCGGGAACUUUCCCGCUU-CCCGCU-UCCCGCUUUC----------------
......-.....(((.(((((...)))))((.((((.......)))).....((.((((((...))))))((((....))))))..-...)).-....)))...---------------- ( -29.20)
>DroYak_CAF1 54493 103 + 1
ACAUCA-ACUCUGCCACACUGCAGCAGUUGCAGCUAUAAAUCUUAGCAUACCGCAGGGCGCCCAGCGCCAAGGAACUUUCCCGCUUACCCGCUUUUCCGCUUUC----------------
....((-(((((((......)))).)))))..((((.......)))).....((..(((((...)))))..(((....))).))......((......))....---------------- ( -26.40)
>consensus
ACAUCA_ACUCUGCCAGACUGCACCAGUUGCAGCUAUAAAUCUUAGCAUACCGCAGGGCGCCCAGCGCCAAGGAACUUUCCCGCUUUCCCGCC____CACCGUC________________
..........((((.....((((.....))))((((.......)))).....))))(((((...)))))..(((....))).((......))............................ (-19.04 = -19.35 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:30 2006