Locus 168

Sequence ID X_DroMel_CAF1
Location 621,805 – 621,913
Length 108
Max. P 0.723002
window270

overview

Window 0

Location 621,805 – 621,913
Length 108
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 73.27
Mean single sequence MFE -45.60
Consensus MFE -24.99
Energy contribution -26.43
Covariance contribution 1.44
Combinations/Pair 1.17
Mean z-score -1.83
Structure conservation index 0.55
SVM decision value 0.40
SVM RNA-class probability 0.723002
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 621805 108 - 22224390
GCUCCUACCGUAAGUGCUCCGAAAUAUGAGUUUCGCGACUGGCCACCGGCGCCCGGGAGCUCCAAGUUGUGUAACU--CUGCAGCGGA---------AAGCCCUAGUCGGUGGCCAGCA
(((.((((((..((.((((((......(((((.((((((((((..((((...))))..)))...))))))).))))--).....))))---------..)).))...))))))..))). ( -43.80)
>DroSec_CAF1 6088 110 - 1
GCUCCUACCGUAAGUGCUCCGAAAUAUGAGUUUCGCGACUGGCUACCGGCGCCCGGGAGCUCCAAGUUGUGUAACUAACUAACUCUCA---------AUGCCCUGGGCGGUGGCCAGCA
........(((....((((........))))...))).(((((((((...(((((((.((....(((((.((.....)))))))....---------..)))))))))))))))))).. ( -40.10)
>DroEre_CAF1 6457 117 - 1
GCUCCAACCGUAAGUGCUCCGAAAUGCGGAAUUCGAGCCUGGCCACAGGCGCCUGGGUGCUGCAAGUUGUGCAAUC--UUGCGGUGGACGAGUCUGCGGACAGUGGACGGUGGCCAGGA
..(((.(((((((((((..(((..(((((.(((((.(((((....)))))...))))).)))))..))).)))..)--)))))))((.((.(((..(.....)..)))..)).)).))) ( -47.70)
>DroYak_CAF1 5233 98 - 1
GCUCCUACCGUAAGUGCUCCGAAAUGCGGAAUUCCAGCCUGGCCACCGGCGCCCGGGUGCUCCAGGUUAUGUAAGC--CUGCUGG-------------------GGCCGGUGGCCAGGA
.......(((((..(......)..)))))........(((((((((((((.(((((......((((((.....)))--)))))))-------------------)))))))))))))). ( -50.80)
>consensus
GCUCCUACCGUAAGUGCUCCGAAAUACGAAAUUCGAGACUGGCCACCGGCGCCCGGGAGCUCCAAGUUGUGUAACC__CUGCAGCGGA_________A_GCCCUGGACGGUGGCCAGCA
...................((((((....))))))..(((((((((((((((....))))..........(((......))).........................))))))))))). (-24.99 = -26.43 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:56 2006