Locus 1676

Sequence ID X_DroMel_CAF1
Location 4,698,608 – 4,698,709
Length 101
Max. P 0.528360
window2757

overview

Window 7

Location 4,698,608 – 4,698,709
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 84.72
Mean single sequence MFE -31.63
Consensus MFE -25.59
Energy contribution -25.70
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.57
Structure conservation index 0.81
SVM decision value -0.01
SVM RNA-class probability 0.528360
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4698608 101 - 22224390
AAGGACAGCCCGCUGGGCCAUAAAUCCUAAUUGGCUCAAGUGGCUCGGCAGGCCUGCAAUUGGGAUUCCUUUCCACUGCCGCCCCCCGCUGCCCUAAUGCC
.(((.((((..((((((((((....((.....)).....)))))))))).(((..(((..(((((.....))))).))).)))....)))).)))...... ( -39.40)
>DroSec_CAF1 51880 86 - 1
AAGGACAGCCCGCUGGGCCAUAAAUCCUAAUUGGCUCAAGUGGCUCGGCAGGCCUGCAAUUGGGAUUCCUUGCCACUGCC---CCCCGC------------
..((...(((.((((((((((....((.....)).....)))))))))).)))..(((..(((.(.....).))).))).---..))..------------ ( -30.60)
>DroEre_CAF1 53130 84 - 1
AAGGACAGCCCGCUGGGUCAUAAAUCCUAAUUGGCUCAAGUGGCACGGCAGGCCUGCAAUUGGGAUUCCUUGUCACUUC-----CCCGC------------
..((..((((...((((........))))...)))).((((((((.((....(((......)))...)).)))))))).-----.))..------------ ( -24.90)
>consensus
AAGGACAGCCCGCUGGGCCAUAAAUCCUAAUUGGCUCAAGUGGCUCGGCAGGCCUGCAAUUGGGAUUCCUUGCCACUGCC___CCCCGC____________
(((((...(((((((((((((....((.....)).....))))))))))..(....)....)))..))))).............................. (-25.59 = -25.70 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:26 2006