Locus 1673

Sequence ID X_DroMel_CAF1
Location 4,692,972 – 4,693,062
Length 90
Max. P 0.974449
window2754

overview

Window 4

Location 4,692,972 – 4,693,062
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 99.56
Mean single sequence MFE -16.81
Consensus MFE -16.09
Energy contribution -16.29
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.96
SVM decision value 1.73
SVM RNA-class probability 0.974449
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4692972 90 + 22224390
ACAGACAAAACCGAGAGACAUCGCAUUGUCUGCCGCUGAAGAAUAAAUAAACUACUCGUAACAACAAUAAGCGGAGCAAGUCAAGCAAAU
.(((((((...(((......)))..)))))))(((((................................))))).((.......)).... ( -17.25)
>DroSec_CAF1 46392 90 + 1
ACAGACAAAACCGAGAGACAUCGCAUUGUCUGCCGCUGAAGAAUAAAUAAACUACUCGUAACAACAAUAAGCGGAGCAAGUCAAGCAAAU
.(((((((...(((......)))..)))))))(((((................................))))).((.......)).... ( -17.25)
>DroSim_CAF1 19509 90 + 1
ACAGACAAAACCGAGAGACAUCGCAUUGUCUGCCGCUGAAGAAUAAAUAAACUACUCGUAACAACAAUAAGCGGAGCAAGUCAAGCAAAU
.(((((((...(((......)))..)))))))(((((................................))))).((.......)).... ( -17.25)
>DroEre_CAF1 46827 90 + 1
ACAGACAAAACCGAGAGACAUCGCAUUGUCUGCCGCUGAAGAAUAAAUAAACUACUCGUAACAACAAUAAGCGGAGCAAGUCAAGCAAAU
.(((((((...(((......)))..)))))))(((((................................))))).((.......)).... ( -17.25)
>DroYak_CAF1 43771 90 + 1
ACAGACAAAACCAAGAGACAUCGCAUUGUCUGCCGCUGAAGAAUAAAUAAACUACUCGUAACAACAAUAAGCGGAGCAAGUCAAGCAAAU
...(((.........(((((......))))).(((((................................))))).....)))........ ( -15.05)
>consensus
ACAGACAAAACCGAGAGACAUCGCAUUGUCUGCCGCUGAAGAAUAAAUAAACUACUCGUAACAACAAUAAGCGGAGCAAGUCAAGCAAAU
.(((((((...(((......)))..)))))))(((((................................))))).((.......)).... (-16.09 = -16.29 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:23 2006