| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,691,832 – 4,691,945 |
| Length | 113 |
| Max. P | 0.654540 |
| Location | 4,691,832 – 4,691,945 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.35 |
| Mean single sequence MFE | -22.20 |
| Consensus MFE | -17.04 |
| Energy contribution | -17.76 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.654540 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4691832 113 + 22224390 UUCAACUGCCCUAAGUAAUUAAGCAACAAUGCGAAUGCAUACUUA----AAUACGAUUUCACU---GCAACGGUUUGGCAAUUAUUUGUUGAGCUAGUGCAUUUAAUUACACUAAUACCA ..............(((((((((.....((((....)))).....----.............(---(((..((((..((((....))))..))))..))))))))))))).......... ( -24.80) >DroSec_CAF1 45285 116 + 1 UUCAACUGCCCUAAGUAAUUAAGCAACAUUGCGAAUGCAUACUUA----AAUACGAACUCACUGCUGCAACGGUUUGGCAAUUAUUUGUUGAGCUAGUGCAUUUAAUUAUACUAAUACCA ..............(((((((((((....(((....)))......----.....(....)..)))((((..((((..((((....))))..))))..)))).)))))))).......... ( -22.10) >DroSim_CAF1 18377 116 + 1 UUCAACUGCCCUAAGUAAUUAAGCAACAAUGCGAAUGCAUACUUA----AAUACGAACUCACUGCUGCAACGGUUUGGCAAUUAUUUGUUGAGCUAGUGCAUUUAAUUACACUAAUACCA ..............(((((((((((...((((....)))).....----.....(....)..)))((((..((((..((((....))))..))))..)))).)))))))).......... ( -25.60) >DroEre_CAF1 45679 117 + 1 AUAAACUGCCCUUAGUAAUAAGGCAACAAUGCGAAUGCAUAUUUAAUUUAAUACGACUUCACU---GCAACGGUUUAGCAAUUAUUCGUUGAAGUAGUGCAUUUAAUCACACUAAUUCCA ......((((.(((....))))))).......((((((((..............(....)(((---.((((((...(....)...)))))).))).))))))))................ ( -21.70) >DroYak_CAF1 42610 110 + 1 UUCAACUGCCCUAAGUAAUUAAGCAACAAUGCGAAUGCAUACUUA----AAUACGACUCCA------CAACGGUUUGGAAAUUAUUUGUUGAACUAGUUCACUUAAUUACACUAAUUCCA ..............(((((((((.((((((((....)))).....----........((((------........)))).......))))(((....))).))))))))).......... ( -16.80) >consensus UUCAACUGCCCUAAGUAAUUAAGCAACAAUGCGAAUGCAUACUUA____AAUACGAAUUCACU___GCAACGGUUUGGCAAUUAUUUGUUGAGCUAGUGCAUUUAAUUACACUAAUACCA ..............(((((((((.....((((....))))..........................(((..((((((((((....))))))))))..))).))))))))).......... (-17.04 = -17.76 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:20 2006