| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,691,057 – 4,691,165 |
| Length | 108 |
| Max. P | 0.663235 |
| Location | 4,691,057 – 4,691,165 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 83.80 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -23.27 |
| Energy contribution | -22.83 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.85 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4691057 108 - 22224390 GUUACCCUCCUCCCACUCCCUUUGCCCACUUUUUGUGCUAUGAUAAGAAUCUGGAAACUUUCACGGGACAACGUGUCGUAUGCGCAGUGUCCUGGCCAAAGUUUUAAC ...................(((((.(((....((((((((((((..(((...(....).)))(((......))))))))).)))))).....))).)))))....... ( -25.40) >DroSim_CAF1 17615 102 - 1 GCUUCCC---UCCCACUCCC---GCCCGCUUUUUGUGCUAUGAUAAGAAUCUGGAAACUUUCACGGGACAACGUGUCGUAUGCGCAAUGUCCUGGCCAAAGUUUUAAC .......---....(((...---(((.(....((((((((((((..(((...(....).)))(((......))))))))).))))))....).)))...)))...... ( -22.90) >DroYak_CAF1 41842 93 - 1 ---------------CGCCCCCUGCCCACUUUUUGUGCUAUCAUAAGAAUCUGGAAACUUUGACGGGACGACGUGUCGUAUGCGCAAUGUCCUGGCCAAAGUUUUAAC ---------------..........(((.((((((((....))))))))..)))((((((((.(((((((..((((.....))))..)))))))..)))))))).... ( -27.10) >consensus G_U_CCC___UCCCACUCCC__UGCCCACUUUUUGUGCUAUGAUAAGAAUCUGGAAACUUUCACGGGACAACGUGUCGUAUGCGCAAUGUCCUGGCCAAAGUUUUAAC .........................(((.(((((((......)))))))..)))(((((((..(((((((..((((.....))))..)))))))...))))))).... (-23.27 = -22.83 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:19 2006