| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,684,302 – 4,684,419 |
| Length | 117 |
| Max. P | 0.695650 |
| Location | 4,684,302 – 4,684,419 |
|---|---|
| Length | 117 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 85.27 |
| Mean single sequence MFE | -29.66 |
| Consensus MFE | -22.15 |
| Energy contribution | -22.15 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.695650 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4684302 117 - 22224390 GAUGGCUCAGCUUGGCUGAGCU-GCAGAAUGCAGCCGAGGAGAAAGCGGGAAGAAAGCCGGUUGGAAAACGGGUGAAAAUCGUAGGAAAAUCGGGGGAAAAUCGAGGAAAACGUGAUG ...((((((((...))))))))-((.....))..((((.......((((.......(((.(((....))).))).....)))).......))))......((((.(.....).)))). ( -32.24) >DroSec_CAF1 37955 118 - 1 GAUGGCUCAGCUUGGCUGAGCUGGCAGGAUGCAGUCGAGGAGAAGGCGGGUAGAAAGCCGGUUGAAAAACGGGUGAAAAUCGUAGGAAAAUCGGGGGAAAAUCGAGGAAAACGUGAUG (..((((((((...))))))))..)..(((.(..((((.......((((.......(((.(((....))).))).....)))).......))))..)...)))............... ( -31.64) >DroEre_CAF1 38345 111 - 1 GAUGGCUCAGCUUGGCU-------CAGGAUGCAGCCGAGGGAAAAGCCGGUUGAAAAUCGGGUGAAAAUCGUAGGAAAACCGUAGGAAAAUCGAGGGGAAAUCGAGGAAAACGUGAUG ..(((((...(((((((-------(.....).))))))).....))))).......((((.((.....((.((((....)).)).))...((((.......)))).....)).)))). ( -25.10) >consensus GAUGGCUCAGCUUGGCUGAGCU_GCAGGAUGCAGCCGAGGAGAAAGCGGGUAGAAAGCCGGUUGAAAAACGGGUGAAAAUCGUAGGAAAAUCGGGGGAAAAUCGAGGAAAACGUGAUG (((..(((..((((((((.............))))))))......((((.......(((.(((....))).))).....))))...........)))...)))............... (-22.15 = -22.15 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:06 2006