Locus 1662

Sequence ID	X_DroMel_CAF1
Location	4,683,889 – 4,683,986
Length	97
Max. P	0.828802

overview

Window 4

Location	4,683,889 – 4,683,986
Length	97
Sequences	4
Columns	116
Reading direction	forward
Mean pairwise identity	82.16
Mean single sequence MFE	-25.30
Consensus MFE	-22.05
Energy contribution	-21.67
Covariance contribution	-0.37
Combinations/Pair	1.10
Mean z-score	-1.69
Structure conservation index	0.87
SVM decision value	0.71
SVM RNA-class probability	0.828802
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4683889 97 + 22224390
CU-------------------UCCCAUUCCCUUUUUCCGCAUUUUCCGCAGCACUUCAGCCGAGUGAAUGAAUCCUUCACAGCGGAGGACACGCACAAAAGCGCAAGCAAGGCAAA
..-------------------........((((.....((.((((((((.((......))...(((((.......))))).))))))))...))......((....)))))).... ( -24.80)
>DroSec_CAF1 37552 88 + 1
UU-------------------UCCCAUUUCC---------AUUUUCCGCAGCACUCCAGCCGAGUGAAUGAAUCCUUCACAGCGGAGGACACGCACAAAAGCGCAAGCAAGGCAAA
..-------------------..((......---------.((((((((..(((((.....)))))..(((.....)))..))))))))...........((....))..)).... ( -22.60)
>DroEre_CAF1 37914 97 + 1
UU-------------------UCCCUUUCCCACUCUCGGCAUUUUCCGCAGCACUCCAGCCGAGUGAAUGAAUCCUUCACAGCGGAGGACACGCACAAAAGCGCAAGCAAGGCAAA
..-------------------..((((...........((.((((((((..(((((.....)))))..(((.....)))..))))))))...))......((....)))))).... ( -25.00)
>DroYak_CAF1 34740 116 + 1
UUCCCAUUCCCUUUUCCCCAUUCCCUCGCCCAUUUUCCGCAUUUUCCGCAGCACUCCAGCCGAGUGAAUGAAUCCUUCACAGCGGAGGGCACGCACAAAAGCGCAAGCAAGGCAAA
.........((((..............((((....(((((....((.((.........)).))(((((.......))))).)))))))))..........((....)))))).... ( -28.80)
>consensus
UU___________________UCCCAUUCCCAUUUUCCGCAUUUUCCGCAGCACUCCAGCCGAGUGAAUGAAUCCUUCACAGCGGAGGACACGCACAAAAGCGCAAGCAAGGCAAA
.......................((................((((((((..(((((.....)))))..(((.....)))..))))))))...........((....))..)).... (-22.05 = -21.67 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:16:05 2006