Locus 1653

Sequence ID X_DroMel_CAF1
Location 4,668,130 – 4,668,249
Length 119
Max. P 0.595029
window2720

overview

Window 0

Location 4,668,130 – 4,668,249
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.90
Mean single sequence MFE -39.27
Consensus MFE -28.60
Energy contribution -29.35
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.73
SVM decision value 0.12
SVM RNA-class probability 0.595029
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4668130 119 - 22224390
UUAUUCGUUGUGCUUUCUCGUUUGGUUCGAUGCCAUUGGGUGGUGGUGGGGCUGCGAAAAUGGGG-CAAACCAAACCCAAAACGUUGGCAAAAUGAAAAUUAUGCUCUCUUUGGCAUUAA
...((((((.((((....((((((((.....))))((((((..((((...(((.(......).))-)..)))).))))))))))..)))).))))))....(((((......)))))... ( -38.00)
>DroSec_CAF1 29411 119 - 1
UUAUUCGUCGUGCUUUCUCGGUUGGUUCGAUGCCAUUGGGUGGUGGUGGGGCUCCGAAAAUGGGG-CAAACCAAACCCAAAACGCUGGCAAAAUGAAAAUUAUGCUCUCUUUGGCAUUAA
...(((((..((((....((..((((.....))))((((((..((((...(((((......))))-)..)))).))))))..))..))))..)))))....(((((......)))))... ( -39.60)
>DroEre_CAF1 30186 119 - 1
UUAUUUGCCGUGCAUUCUUGGGUGGUUCGAUGCCAU-GGGUGGUGGAGGGGCUCCAAAAACGGGGCCAAACCAAACCCAAAACGCUGGCAAAAUGAAAAUUAUGCUCUCUUUGGCAUUAA
...(((((((.((........(((((.....)))))-((((..(((...((((((......))))))...))).)))).....))))))))).........(((((......)))))... ( -42.70)
>DroYak_CAF1 26708 118 - 1
UUGUUUGCAGUGCAUUCUUGGGUGGUUCGAUGCCAU-GGGCGGUGGUGGGGCUCCAAAAACGGGG-CAAACCAAACCCAAAACGCUGGCAAAAUGAAAAUUAUGCUCUCUUUGGCAUUAA
............((((....))))....((((((((-(((...((((...(((((......))))-)..))))..))))....(..((((.(((....))).))))..)..))))))).. ( -36.80)
>consensus
UUAUUCGCCGUGCAUUCUCGGGUGGUUCGAUGCCAU_GGGUGGUGGUGGGGCUCCAAAAACGGGG_CAAACCAAACCCAAAACGCUGGCAAAAUGAAAAUUAUGCUCUCUUUGGCAUUAA
............................(((((((..((((..((((...(((((......)))).)..)))).)))).....(..((((.(((....))).))))..)..))))))).. (-28.60 = -29.35 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:53 2006