Locus 1649

Sequence ID X_DroMel_CAF1
Location 4,665,582 – 4,665,696
Length 114
Max. P 0.678290
window2711

overview

Window 1

Location 4,665,582 – 4,665,696
Length 114
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.22
Mean single sequence MFE -29.88
Consensus MFE -20.34
Energy contribution -21.90
Covariance contribution 1.56
Combinations/Pair 1.13
Mean z-score -2.23
Structure conservation index 0.68
SVM decision value 0.30
SVM RNA-class probability 0.678290
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4665582 114 + 22224390
U------AUUCGUCCGUGCUCCGGUGUUCGUUAAAAAUGGGCGCUGUUUGCAUUGAAUAAAAUUUUAAUAGGAGUACGGGACUUAAUCCGUAUGCGAUGAAUAAAUAAUCAAAAGUGAAA
(------((((((((((((((((((((((((.....)))))))))......((((((......)))))).))))))))(((.....)))......))))))))................. ( -34.30)
>DroSec_CAF1 26918 112 + 1
U------AUUCGUCCGUGCUCC-GUGUUCGUUAAAAAUGGUCGCUGUUUGCAUUGAAUAA-AUUUUAAUGGGAGUACGGGACUUAAUCCGUAUGCGAUGAAUAAAUAAUCAAAAGUGAAA
(------(((((((((((((((-(((..(((.....)))..)))......(((((((...-..)))))))))))))))(((.....)))......))))))))................. ( -31.90)
>DroEre_CAF1 27645 112 + 1
U------AGUCGUCCGUGCUCG-UUGCUCGCUAAAAAUGGGCGAUGUUUGCAUUGAAUAA-AUUUUAAUAGGAGUACGGGACUUAAUCCGUAUGCGAUGAAUAAAUAAUCAAAAGUGAAA
.------..(((((((((((((-(.(((((((.......))))).))..))((((((...-..))))))..)))))))(((.....)))......))))).................... ( -26.60)
>DroYak_CAF1 24092 118 + 1
UCGUACUAUUCACGCGUGCUCU-GUGUUUGUUAAAAAUCGGCGAUGUUUGCAUUGAAUAA-AUUCAAAUAGCAGUACGGGACUUAAUCCGUAUGCGAUGAAUAAAUAAUCAAAAGUGAAA
......(((((((((((((.((-(((((((...........(((((....))))).....-...)))))).)))....(((.....)))))))))).))))))................. ( -26.71)
>consensus
U______AUUCGUCCGUGCUCC_GUGUUCGUUAAAAAUGGGCGAUGUUUGCAUUGAAUAA_AUUUUAAUAGGAGUACGGGACUUAAUCCGUAUGCGAUGAAUAAAUAAUCAAAAGUGAAA
.......(((((((((((((((.((((((((.....))))))))(((((.....)))))...........))))))))(((.....)))......))))))).................. (-20.34 = -21.90 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:45 2006