| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 4,653,376 – 4,653,479 |
| Length | 103 |
| Max. P | 0.941148 |
| Location | 4,653,376 – 4,653,479 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 84.76 |
| Mean single sequence MFE | -21.06 |
| Consensus MFE | -20.12 |
| Energy contribution | -20.12 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.96 |
| SVM decision value | 1.32 |
| SVM RNA-class probability | 0.941148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4653376 103 + 22224390 CUCGCUGCACUUCCUCACCUCCC---------CCCCCACCGCACUUUCUUUGGGCCAACUCCCUUUCUCUUUCUGGCCGUGACACGUUGAUAAAUGACAUUUGCGGCGUCAA ..(((((((.....((((.....---------...........(.......)(((((................)))))))))..((((....)))).....))))))).... ( -20.69) >DroEre_CAF1 15678 97 + 1 CUCGCUGCACU-ACCCAUCU----U----------GUCCCGCACUUUCUCUGGGCCAACUCCCUUUCUCUUUCUGGCCGUGACACGUUGAUAAAUGACAUUUGCGGCGUCAA ..(((((((..-........----(----------(((.(...(.......)(((((................)))))).))))((((....)))).....))))))).... ( -21.19) >DroYak_CAF1 11228 112 + 1 CUCGCUGCAUUCACUCACCUCCCUUACCAUCCCCACCCCCGCACUUUCUCUGGGCCAACUCCCUUUCUCUUUCUGGCCGUGACACGUUGAUAAAUGACAUUUGCGGCGUCAA ..(((((((.((((.............................(.......)(((((................)))))))))..((((....)))).....))))))).... ( -21.29) >consensus CUCGCUGCACU_ACUCACCUCCC_U_______CC_CCCCCGCACUUUCUCUGGGCCAACUCCCUUUCUCUUUCUGGCCGUGACACGUUGAUAAAUGACAUUUGCGGCGUCAA ..(((((((..............................(((.(.......)(((((................))))))))...((((....)))).....))))))).... (-20.12 = -20.12 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:14 2006