Locus 1632

Sequence ID X_DroMel_CAF1
Location 4,652,264 – 4,652,382
Length 118
Max. P 0.511093
window2675

overview

Window 5

Location 4,652,264 – 4,652,382
Length 118
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 97.46
Mean single sequence MFE -34.85
Consensus MFE -32.46
Energy contribution -32.65
Covariance contribution 0.19
Combinations/Pair 1.08
Mean z-score -1.57
Structure conservation index 0.93
SVM decision value -0.04
SVM RNA-class probability 0.511093
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4652264 118 - 22224390
UGCGAAAGAGACGGUUAGACGGCGGAGACAAAAAGCCUUGGCAGGAAGUUUUGGCUACGGAAAUUUAUAAGAUUUAUGUUUAAUUGUUGUUUUUGGCUUUUGCGGCAGCUGCCGCGUG
.((.(((((((((((((((((((.(((((.....((....)).....))))).)))....(((((.....)))))..))))))))))).))))).))....(((((....)))))... ( -37.10)
>DroSim_CAF1 2219 118 - 1
UGGGAAAGAGACGGUUGGACGGCGGAGACAAAAAGCCUUGGCAGGAAGUUUUGGCUACGGAAAUUUAUAAGAUUUAUGUUUAAUUGUUGUUUUUGGCUUUUGCGGCAGCUGCCGCGUG
...(((((.((((((((((((((.(((((.....((....)).....))))).)))....(((((.....)))))..))))))))))).))))).......(((((....)))))... ( -33.20)
>DroEre_CAF1 14491 118 - 1
UGCGAAAGAGACGGUUGGACGGCGGAGACAAAAAGCCUUGGCAGGAAGUUUUGGCUACGGAAAUUUAUAAGAUUUAUGUUUAAUUGUUGUUUUUGGUUUUUGCGGCAGCUGCCGCGUG
..((((((.((((((((((((((.(((((.....((....)).....))))).)))....(((((.....)))))..))))))))))).))))))......(((((....)))))... ( -35.50)
>DroYak_CAF1 10087 118 - 1
UGCGAAAGAGACGCUUGGGCGGCGGAGACAAAAAGCCUUGGCAGGAAGUUUUGGCUACGGAAAUUUAUAAGAUUUAUGUUUAAUUGUUGUUUUUGGCUUUUGCGGCAGCUGCCACGUG
.(((((((...(((....))).(((((((((..((((..(((.....)))..))))(((.(((((.....))))).))).......))))))))).)))))))(((....)))..... ( -33.60)
>consensus
UGCGAAAGAGACGGUUGGACGGCGGAGACAAAAAGCCUUGGCAGGAAGUUUUGGCUACGGAAAUUUAUAAGAUUUAUGUUUAAUUGUUGUUUUUGGCUUUUGCGGCAGCUGCCGCGUG
.((.(((((((((((((((((((.(((((.....((....)).....))))).)))....(((((.....)))))..))))))))))).))))).))....(((((....)))))... (-32.46 = -32.65 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:13 2006