Locus 1628

Sequence ID X_DroMel_CAF1
Location 4,640,662 – 4,640,776
Length 114
Max. P 0.555107
window2669

overview

Window 9

Location 4,640,662 – 4,640,776
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 84.73
Mean single sequence MFE -22.25
Consensus MFE -18.40
Energy contribution -19.52
Covariance contribution 1.13
Combinations/Pair 1.04
Mean z-score -1.44
Structure conservation index 0.83
SVM decision value 0.04
SVM RNA-class probability 0.555107
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4640662 114 - 22224390
AUCCUCAUUUCUUCCUAUGCAUGGGGUCAGUAAUUUUGCAUGCUUAGCUUUCAGCUUGCUCGCUCCCAAGAGUCCUGCGUCCUUCCGACCCAUUGCAGACCCGUUCUUCUUCUU------
.................((((..(((((.(......((((.((..(((.....))).))..((((....))))..)))).....).)))))..)))).................------ ( -23.80)
>DroSec_CAF1 26286 113 - 1
AUCCUCAUUUCUUUCUGUGCAUUGGGUCAGUAAUUUUGCAUGCUUAGCUUUCAGCUCGCUCGCUCCCAAGAGACCUGCGUCCUUCC---CCAUUGCCGCCCCGUUCUUCUUAUUCU----
................(.(((.((((..((...............(((.....)))(((...(((....)))....)))..))..)---))).))))...................---- ( -18.60)
>DroEre_CAF1 24368 117 - 1
AUCACCAUUUCUGCCAAUGCAUUGGGUCAGUAAUUUUGCAUGCUUAGCUUUCAGCUCGCUCGCUCCCAAGAGUCCUGCGUCCUUCCGACCCAUUGCCACCCGUUCC--CUUAUCCUGCC-
..................(((.((((((.................(((.....)))(((..((((....))))...))).......)))))).)))..........--...........- ( -23.80)
>DroYak_CAF1 25855 120 - 1
AUCUUAAUUUCUUCCAAUGCAUUGGGUCAGUAAUUUUGCAUGCUUAGCUUUCAGCUCACUCGCUCCCAAGAGUCUUGCGUCCUUCCGACCCACUGCCACCCCGUCCUCCUUCUCCUCCCU
..................(((.((((((.(((....)))((((...(((((.(((......)))....)))))...))))......)))))).)))........................ ( -22.80)
>consensus
AUCCUCAUUUCUUCCAAUGCAUUGGGUCAGUAAUUUUGCAUGCUUAGCUUUCAGCUCGCUCGCUCCCAAGAGUCCUGCGUCCUUCCGACCCAUUGCCACCCCGUCCUUCUUAUCCU____
..................(((.((((((.(((....)))((((..(((.....))).((((........))))...))))......)))))).)))........................ (-18.40 = -19.52 +   1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:07 2006