Locus 1623

Sequence ID X_DroMel_CAF1
Location 4,632,914 – 4,633,011
Length 97
Max. P 0.795644
window2661

overview

Window 1

Location 4,632,914 – 4,633,011
Length 97
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 71.73
Mean single sequence MFE -23.29
Consensus MFE -7.22
Energy contribution -7.86
Covariance contribution 0.64
Combinations/Pair 1.17
Mean z-score -1.86
Structure conservation index 0.31
SVM decision value 0.60
SVM RNA-class probability 0.795644
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 4632914 97 + 22224390
UUCAUUUGGCUAAUUAAAUGUCAUAAUUCCAGCAUUUUGUAAGCGGCCUUUUGGCAUUUGGCCA-----------------------GUUUGCAAUUCGUUUGCUGCCAGCCGCAUGAUA
.((((.((((((((((.......))))).(((((..((((((((((((...........)))).-----------------------))))))))......)))))..))))).)))).. ( -29.30)
>DroSec_CAF1 19204 83 + 1
UUCAUUUGGCUAAUUAAAUGUCAUAAUUCCAGCAUUUUGUAAGCGUCCCU-------UUGGCCA-----------------------GUUCGCAGUGCGUUUG-------CCGCACGCUA
.....((((((((....((((.((((..........))))..))))....-------)))))))-----------------------)...((.(((((....-------.))))))).. ( -19.10)
>DroSim_CAF1 695 82 + 1
UUCAUUUGGCUAAUUAAAUGUCAUAAUUCCAGCAUUUUGUAAGCGGC-CU-------UUGGCCA-----------------------GUUUGCAGUGCGUUUG-------CCGCACGCUA
......((((.........)))).......(((....((((((((((-(.-------..)))).-----------------------)))))))(((((....-------.)))))))). ( -25.80)
>DroEre_CAF1 17244 92 + 1
CUCAUUUGGCUAAUUAAAUGUCAUAAUUCCAGCAUUUUGUAAGCGGCCUUUGGA-AUUUGGCAU-----------------------GUCCGCAUUUUGGUCU----CCCUCGAAUGCUA
.................((((((.((((((((....(((....)))...)))))-)))))))))-----------------------....((((((.((...----.))..)))))).. ( -19.10)
>DroYak_CAF1 18310 116 + 1
UUCAUUUGGCUAAUUAAAUGUCAUAAUUCCAGCAUUUUGUAAGCGGCCUUUGGCCAUUUUCCAUUUCACUAUUUGCACUUCGUUUGCGUCCGCAUUUUGGUCU----CUGUCGCUUGCUA
......((((.........))))...............(((((((((....(((((.................(((....((....))...)))...))))).----..))))))))).. ( -23.15)
>consensus
UUCAUUUGGCUAAUUAAAUGUCAUAAUUCCAGCAUUUUGUAAGCGGCCUUU_G__AUUUGGCCA_______________________GUUCGCAGUUCGUUUG____C__CCGCAUGCUA
........(((.((.((((((..........)))))).)).)))...............................................((.(((((............))))))).. ( -7.22 =  -7.86 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:15:00 2006