Locus 162

Sequence ID X_DroMel_CAF1
Location 595,072 – 595,167
Length 95
Max. P 0.553110
window259

overview

Window 9

Location 595,072 – 595,167
Length 95
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 84.12
Mean single sequence MFE -18.95
Consensus MFE -12.18
Energy contribution -12.38
Covariance contribution 0.20
Combinations/Pair 1.31
Mean z-score -1.81
Structure conservation index 0.64
SVM decision value 0.04
SVM RNA-class probability 0.553110
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 595072 95 + 22224390
---GUUAUCCGUUCAGCAAAACACUUUUGUAACCACAAAAGAGAUUCAAAUCGAGUUUACUCGCCAAAAUGUUUUCCAUUAAACAAACAGGUUGAGCA
---.......(((((((......(((((((....)))))))..........((((....))))......(((((......))))).....))))))). ( -20.60)
>DroSec_CAF1 59601 95 + 1
---GUUAUCCGCUCAGCAAAACACUUUUGUAACCACAAAAGAGAUUCAAAUCGAGUUUACUCGCCAAAAUUUUCUCCAUUAAACAAACAGGAUGAGCA
---.......(((((((......(((((((....)))))))((((((.....))))))....))..........(((............)))))))). ( -18.70)
>DroSim_CAF1 59638 95 + 1
---GUUAUCCGCUCAGCAAAACACUUUUGUAACCACAAAAGAGAUUCAAAUCGAGUUUACUCGCCAAAAUGUUCUCCAUUAAACAAACAGGAUGAGCA
---.......(((((((......(((((((....)))))))((((((.....))))))....))..........(((............)))))))). ( -18.70)
>DroEre_CAF1 60550 90 + 1
---GGUAACCGCGCAGCAGAACACUUUUGUGACCACAAAG-----CGAAACCGAGUUUGCUCACCGAAAUGUUCUCCAUUAAACAAACAGGAUGAGCA
---(((...(((.........(((....)))........)-----))..))).....((((((((....((((........))))....)).)))))) ( -19.63)
>DroYak_CAF1 62574 93 + 1
GAAGGAAUCCGCUUGGCAAAACACUUUUGCAACCACAGAA-----UCAAAUCGAGUUUGCUCGCCAAAACGUUCGCCACUAAACAAGCAGUUUGAGCA
..........((((((((((.....))))).......(((-----(.....((((....)))).......)))).........))))).......... ( -17.10)
>consensus
___GUUAUCCGCUCAGCAAAACACUUUUGUAACCACAAAAGAGAUUCAAAUCGAGUUUACUCGCCAAAAUGUUCUCCAUUAAACAAACAGGAUGAGCA
..........(((((........(((((((....)))))))..........((((....)))).............................))))). (-12.18 = -12.38 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:37:39 2006